BAC Information

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BAC

Clone NameMSMg01-470K13
Chromosome4 (Build37)
Map Location 56,709,350 - 56,709,593
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K13.T7 (MSMg01no470_k13.b1)MSMg01-470K13.TJ (MSMg01no470_k13.g1)
ACCAG553610AG553611
length757777
length of high quality
(start - end)
79 (170 - 248)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no470_k13.b1 PHD_FILE: MSMg01no470_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:38 2005CHROMAT_FILE: MSMg01no470_k13.g1 PHD_FILE: MSMg01no470_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACAATTCCCGGCGCCCAANGAAGACCAATTTCGAACCCCCGCGGAANNN
AANATTTTTGCCTCTACCACTAAGTGGATGGAGGGATAAAGTCAGGCCTT
GTGATCCATAGATGACAATGAACTGTATCTCTACCAGACACACTGCCACA
TGCAGTTCTTTGGGGTTGCTTTTCTTGATACCACAGCATCAGAGAGAGCT
TCCCCTGTGAATCCATTTATCACTAACAATTTGCAAGGTTTTCTTTTCCT
GCTAAGCATTCATTACCACCTCATCTTTGAGACTTGTGTGTTACCTACAT
CCTATCAGCTAATTAAATTGTGGCTAAAGTAAACAGTGATATGGCCAACA
TTTCTTCTCAGCTTTCTGTACTGCCTGGAACAGTGTCTCATGTGTCAGAT
TCAATACCCAGCTTAGTGAATGACTGAGGTCTACCACCTCCTGCAGTACA
CTAGTGTGGGGAAGAATCCCCCAAAGGAATACAAGGCCACCCTAGGCGAA
GGGAAAATGAACCACACATCACTCCAGACAAGGCTATTTTTTCTGTGAAG
ACGCTGTTGCCCGCCCCCCCCTACCACTCCCCCCTCCATCCACGTCCACC
CCCCCCTCCCCTAACGATGATATGCCCATTTTCTTACAATATGGTATTTT
CTTCTTTCCCACCTTATAGGCGGGAATACCCCTTCTGAATCCCATCCCTC
CCCCCCCCACCNTTCCTGACTCTAACCTCCATTACCCTCCCACCTTACCC
GTACCCC
CGATGATGTGNTAGGCCTGGNGGNCGCCTGGTTTCAAACCTGAGGTGACC
TATAGAAGGTTTCAGAAATTCAACAGTTCCTAAGACCTCATGCACTGAAG
GCTTGGTCCCCTGTTGGTGGCATTACTGAGAAGGCACTAGGTCATGAGGG
TGTTAACCTACGGGTGAACGAACCCGCGGATGAGGGTGTCATGGGGGCAG
GGCAGCTGAAGGGGACAGATCACTGGTGCATGACACTGAAGGTACATTTA
TTCCCTGGATTCCCCTTCTCTCCTGGCCCCCACCGTGTGCTTTCTTCCAT
GGTGTCTGGCTTTCTCTGGTGTTTATGGAACAGAACCTCTGAAACTATGA
ACAAAATATAACTTTTATTTTTAAATGGTTTTAGAGCTTTATTGTAGAAA
GGCAGGGGAAAGGAGAGAAGGGAGAGAGAGAGAGAGAGAGAGAGAGACCT
TCCCTCTCATTTCCCTCCTCCCTCTCCCCCTCTCCCCTTTCCCCCTTTCC
CCTCCTTTTTTTCTTTTCCCTTTCCCCCTTTCCTTCCCCTCCCCCTTTTC
TCTCTTCTTCCCTTCCTTCCTCCTCCCCCCCTTTTCTTCCCCCCCCTTCT
CCTCCTCTCCTCCTCTCTCTTTTCCCTTTTTTCCCCTTCTCCTTCTTTCT
CTTCCCCCTTCTTTCTTTTTTTTCTTTNTCTCCCCTCTTTCCCCCCCTCT
TTCCCCCTCTTCCCTTTTCCTCTCCCCCTTTCTTTTCTCCTCTCCCCCTC
TTCTCTCCTCTTCCCTCTTTTTCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k13.g1 MSMg01no470_k13.g1 CHROMAT_FILE:
MSMg01no470_k13.g1 PHD_FILE: MSMg01no470_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:39 2005
         (244 letters)



>mm_chr4_56709150_56709793
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagttcctaagacctcatgcactgaaggcttggtcccctgttggtggcattactgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagttcctaagacctcatgcactgaaggcttggtcccctgttggtggcattactgagaa 385

                                                                       
Query: 61  ggcactaggtcatgagggtgttaacctacgggtgaacgaacccgcggatgagggtgtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcactaggtcatgagggtgttaacctacgggtgaacgaacccgcggatgagggtgtcat 325

                                                                       
Query: 121 gggggcagggcagctgaaggggacagatcactggtgcatgacactgaaggtacatttatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 gggggcagggcagctgaaggggacagatcactggtgcatgacactgaaggtacatttagt 265

                                                                       
Query: 181 ccctggattccccttctctcctggcccccaccgtgtgctttcttccatggtgtctggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccctggattccccttctctcctggcccccaccgtgtgctttcttccatggtgtctggctt 205

               
Query: 241 tctc 244
           ||||
Sbjct: 204 tctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)