BAC Information

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BAC

Clone NameMSMg01-470P18
Chromosome4 (Build37)
Map Location 86,294,159 - 86,294,416
singlet/doubletsinglet
Overlap genenone
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388
Downstream geneAdfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P18.T7 (MSMg01no470_p18.b1)MSMg01-470P18.TJ (MSMg01no470_p18.g1)
ACCAG553858AG553859
length854835
length of high quality
(start - end)
---266 (62 - 327)
definitionCHROMAT_FILE: MSMg01no470_p18.b1 PHD_FILE: MSMg01no470_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:04 2005CHROMAT_FILE: MSMg01no470_p18.g1 PHD_FILE: MSMg01no470_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTTGCGTCCGCCATATGACCNACGACCCGTCCCAAAAACCGTGGAACC
CCGCCCCAATTTTTCCCCACCCAGGACGCCCACTGCAATACGCCCAGATC
ACTACTATTACCACCCCAACTCTCCTGTATTTGAAGGAGCCGGTGGCAGC
TTCGACTACCGACCACCGTTCCCAAAGGAGTCCGATGTTCCGTTCCATTC
ACCATTACTTGCCCTATCGTCGGAATCTCACAACCCAGATGGTATTTCCC
CATTACTGTTGTTTCACGCCGTACGCTTTGCAGAATTCTGAGGCCCCGTA
CCATTTCGCACGTGTCTTGCACTTTTTTTTTTTTTATTTCTCCCCCCCCT
GCCACCCCAACCGCCTTTCGTCTTTTCCTCCCGCCCTCCGCCCCCCAAGT
ACCCTCCCTCCCCGTTTTTCCTATCCCCCCTCCCCCTTTCTCCCTTTCTC
CCCCCCCTGTGCCTCTCTCATCTGCATACCTCCCTGATCCTCTCCCCTCC
CCCCCCCTTTTGTTCGTTCATCTCCCCCCGCTTCCCTTTCCCTCCCGCCG
CCCCTTTCCTCTCCCCCCCCGTCCTTCTCCTCTTCCCCTCTCTTCCCCCT
CTTTCGTTCGTTTCTATTTCCTCCTCTCCCCAGATTGTTCTCCCTCGGGC
CGCTCTTTTTTTCTTTTCTTCTCCCCCCCGAGCGCTATCTGATGCTCTTC
CCACCCGGCCGCTCTCTGTTCCGTCCCTGCCTCTTTCTTCTCTCTCGGGC
CGACCTGTTCCCGTCGCCTTTTTTTCGGCTTCTTTTGCCCCCGCCCCTTT
ACTTCCCTCTTTCACAGCCCCATTCTTCCCTTCTTCCCTTTTTCTTCCCA
CTTC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCGCCAATTCTATAAAATGACACAGGATGCATAACAA
GATCTCTTACGAAAGTTCACATCATTTACAACTAAGATCAAGCAGCCAAA
CAGTAGATGAATGTTCACCAAAGACACAGGAATAAAACAGAGGCAACCAT
TTAAAAAAAAAAAGATATATATTACATTTTCAATAAAATAGTGTCTTTCC
TTGTGTTAGTTGGGTGGTCTTTTGCCTTAAGAGGACAGGGCTGTGAGTGT
GTGGTCATTGGGCTCAATCATCCGCTTTTTTTTTAAAACATCAGGAACTT
CGTCAGTGTCAGATGTTTTGTCTTTATCAGGCTAAGCAAGCATCCTGTCA
TACAACAACCCCTTATGTTACCACCCACGTCTGTTCCCATGGCGAAGACT
GCCTCCCCATCCGATTCCGCCGATTTCCCCCGTTCCCTCCTATTCCCCCC
CCCTTCCTCATCTTCCCCCCCCCTCCCCTTTCCTTCCCCCTCTTTTCTTC
CCCCCCTCCCCTCCTCCCCTATTTTTCCCTTTCTCTCCCTTTCGTCACTC
CCTTTTTCTCCCCCCGCTCCTGTCTCACTCCTTCCCTTCACTCCCCCTCC
TTCCCTTACCTCTTCCCCCCCCTTTTCCCTTCCCTGTTCCCTATTCTCTT
TTTCCTCTCCCCCCCCTTTTTTCCCCATTCCCCGTGTGCTTCCCTTCCAC
CCTCCACCCACGCCACTTTCGTTAGTTGAGCATTCCTCCCTCATCCCCAT
CCTCTCTCTCCCCCTATGTCAATACGACTACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p18.g1 MSMg01no470_p18.g1 CHROMAT_FILE:
MSMg01no470_p18.g1 PHD_FILE: MSMg01no470_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:04 2005
         (266 letters)



>mm_chr4_86293952_86294617
          Length = 666

 Score =  478 bits (247), Expect = e-139
 Identities = 256/259 (98%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   aattctataaaatgacacaggatgcataacaagatctcttacgaaagttcacatcattta 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aattctataaaatgacacaggatgcataacaagatctcttacgaaagttcacatcattta 267

                                                                       
Query: 68  caactaagatcaagcagccaaacagtagatgaatgttcaccaaagacacaggaataaaac 127
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 268 caactaagatcaagcagccaaatagtagatgaatgttcaccaaagacacaggaataaaac 327

                                                                       
Query: 128 agaggcaaccatttaaaaaaaaaaagatatatattacattttcaataaaatagtgtcttt 187
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 agaggcaaccatttaaaaaaaaaa-gatatatattacattttcaataaaatagtgtcttt 386

                                                                       
Query: 188 ccttgtgttagttgggtggtcttttgccttaagaggacagggctgtgagtgtgtggtcat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccttgtgttagttgggtggtcttttgccttaagaggacagggctgtgagtgtgtggtcat 446

                              
Query: 248 tgggctcaatcatccgctt 266
           |||| ||||||||||||||
Sbjct: 447 tgggttcaatcatccgctt 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)