ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATTT
TCTCCACTCATCTTTCAAGACCTTCTTTTTGCTTCTTTTCTAAAAAGTTT
TACTTAAACCATATGAGCAATGTTCTGTTCTTCCTACAACCAACTTAGTT
GGTGGGATAGCTGTGAAACAATTGTTTATTGATAGTCCTTTCTAGAAAGA
AAACTGAGCTGGACTCTTCTATGATATTCACTACTTGACACTGTGTTTAT
ACTTGGTGCATAGTTGTATAATAATTATTTTCAAACTGTTCATAAGAAAA
ATATAAAATCAGAGACTTAGAAAACTTTAGAAAAGGAAATAAGAGTTTAC
CCAATATTTATTGAATGTCATATATACTCAATGTATATACCCTTAAGTTA
GGATATTTTCATGATTTCTCATAGCACTTTGTAGAAAGTATTTTCATTTG
CCAGGGAAAGGACTGAAATTTAGCAAGTGTAGTAAATGTATACAAGTACA
TACATACCGATTAATTCATGTTTCTTTTAAGCCCAGGTATTCTAAATGGT
TTGTCTTTTGTTCTGTTCTCTCTTGCCTCTGGGAGAGATCAGTTCTGGTT
AAATGCATTCAGGGAGCCTTTCATTTTCCAGCTGTCCCTTGAGTGGTCAA
GGATGTTCAAACACCTCTGAACCCCAGGCTTTTCTCTACTCGGCAACTTG
CANGTTN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTG
TTGATTTTGTTACCCTCTATCAGCAGGCATGGGAGACAAGCTCTCTTCTC
TGAGTTTCAATGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAG
GGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGA
AGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAG
GTGGCCAGTTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGG
CTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCGCCGCCT
CAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGA
AGATGGCGCCGCCCCAAAATCTCTGCGACTCTCTCGCCCGTCCCAGAAAC
GGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGTCCTCCGCG
GAGTCCCGGAGGCAAGAAG

Query= MSMg01no471_m13.b1 MSMg01no471_m13.b1 CHROMAT_FILE:
MSMg01no471_m13.b1 PHD_FILE: MSMg01no471_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:09 2005
         (679 letters)



>mm_chr4_96487439_96488517
          Length = 1079

 Score = 1234 bits (638), Expect = 0.0
 Identities = 667/682 (97%), Gaps = 9/682 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttacctctgagccccatcttttaagggggttatttgattttctccactc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgagccccatcttttaagggggttatttgattttctccactc 264

                                                                       
Query: 65  atctttcaagaccttctttttgcttcttttctaaaaagttttacttaaaccatatgagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctttcaagaccttctttttgcttcttttctaaaaagttttacttaaaccatatgagca 324

                                                                       
Query: 125 atgttctgttcttcctacaaccaacttagttggtgggatagctgtgaaacaattgtttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttctgttcttcctacaaccaacttagttggtgggatagctgtgaaacaattgtttat 384

                                                                       
Query: 185 tgatagtcctttctagaaagaaaactgagctggactcttctatgatattcactacttgac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tgatagtcctttctagaaagaaaactgagctggactcttctatgatattcactacttggc 444

                                                                       
Query: 245 actgtgtttatacttggtgcatagttgtataataattattttcaaactgttcataagaaa 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 actgtgtttatacttggtgcatagttgtaaaataattattttcaaactgttcataagaaa 504

                                                                       
Query: 305 aatataaaatcagagacttagaaaactttagaaaaggaaataagagtttacccaatattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatataaaatcagagacttagaaaactttagaaaaggaaataagagtttacccaatattt 564

                                                                       
Query: 365 attgaatgtcatatatactcaatgtatatacccttaagttaggatattttcatgatttct 424
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 attgaatgtcatatatattcaatgtacatacccttaagttaggatattttcatgatttct 624

                                                                       
Query: 425 catagcactttgtagaaagtattttcatttgccagggaaaggactgaaatttagcaagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catagcactttgtagaaagtattttcatttgccagggaaaggactgaaatttagcaagtg 684

                                                                       
Query: 485 tagtaaatgtatacaagtacatacataccgattaattcatgtttcttttaagcccaggta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtaaatgtatacaagtacatacataccgattaattcatgtttcttttaagcccaggta 744

                                                                       
Query: 545 ttctaaatggtttgtcttttgttctgttctctcttgcctctgggagagatcagtt----- 599
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
Sbjct: 745 ttctaaatggtttgtcttttgttctgttctctcttgcttctgggagagatcagtttgtct 804

                                                                       
Query: 600 ----ctggttaaatgcattcagggagcctttcattttccagctgtcccttgagtggtcaa 655
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcttctggttaaatgcattcagggagcctttcattttccagctgtcccttgagtggtcaa 864

                                 
Query: 656 ggatgttcaaacacctctgaac 677
           ||||||||||||||||||||||
Sbjct: 865 ggatgttcaaacacctctgaac 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)