Query= MSMg01no471_n03.b1 MSMg01no471_n03.b1 CHROMAT_FILE:
MSMg01no471_n03.b1 PHD_FILE: MSMg01no471_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:12 2005
(654 letters)
>mm_chr4_150693437_150694489
Length = 1053
Score = 1123 bits (581), Expect = 0.0
Identities = 639/663 (96%), Gaps = 10/663 (1%)
Strand = Plus / Minus
Query: 1 ctatggatgaaggacagacataggttttgtaaggctagaaagtccatgatcaatgctctc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctatggatgaaggacagacatgggttttgtaaggctagaaagtccatgatcaatgctctc 619
Query: 61 gtcaatgttttctggctgcgaagggtatggcccaaagcagaagaccaggctagcttcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtcaatgttttctggctgcgaagggtatggcccaaagcagaagaccaggctagcttcggc 559
Query: 121 tggatgaaatctcattgacaaaatcctccatctcatttatgggggggggagaacattttc 180
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 558 tggatgaaatctcattgacaaaatcctccatctcatttatggggggggg-ggacattttc 500
Query: 181 tatgtctcttgggagctcctgcgttctggaggggtacaaactcagcagcttgactgttgc 240
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 499 tatgtctcttgggagctcctaagttctggaggggtacaaactcatcagcttgactgttgc 440
Query: 241 cgagctcatggttggcagcagaaagctgcgagagtctcccttgttcctcctctggtcatt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgagctcatggctggcagcagaaagctgcgagagtctcccttgttcctcctctggtcatt 380
Query: 301 caggacacatctgaggataggagctaggaatggggcattcattgcacatgcccaccaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caggacacatctgaggataggagctaggaatggggcattcattgcacatgcccaccaagc 320
Query: 361 cttcagcccagcagtaaccaagctgcccacagggaaggaagcgtcttgctgatccattag 420
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 319 cttcagcccagcagtaaccaagctgcccacaggggaggaagcctcttgctgatccattag 260
Query: 421 gctcagctctggtcaccctgtggcagaactgttggttgcagaaatgccccttagctt--- 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gctcagctctggtcaccctgtggcagaactgttggttgcagaaatgccccttagcttcca 200
Query: 478 ----ccttcctgcctagtgtggcatcagggcaaggggacactgaaggctgggacactacc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggtaccttcctgcctagtgtggcatcagggcaaggggacactgaaggctgggacactacc 140
Query: 534 ttcagtgtattagcctgacactacagtctctttcttcaagaccctagcagtcccagcctt 593
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 139 ttcagtgtattagtctgacactacagtctctttcttcaagaccctagaagtcccagcttt 80
Query: 594 ttcacagctgtttagatcctctagcccagggcccacctggaaatgttcccaga--ctccc 651
|||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 79 ttcatagctgtttagatcctccagcccaaggcccacctggaaatgttcccagactctccc 20
Query: 652 aga 654
|||
Sbjct: 19 aga 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_n03.g1 MSMg01no471_n03.g1 CHROMAT_FILE:
MSMg01no471_n03.g1 PHD_FILE: MSMg01no471_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:13 2005
(625 letters)
>mm_chr4_150464939_150465963
Length = 1025
Score = 1178 bits (609), Expect = 0.0
Identities = 621/625 (99%)
Strand = Plus / Plus
Query: 1 taagcctcctcggccccagctccttcttatccctgcacttttccccaagcaccgtggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagcctcctcggccccagctccttcttatccctgcacttttccccaagcaccgtggacc 260
Query: 61 gagcagccaagaggagccgctcctcaggagacaaagtcacagaggctctgaaagccctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcagccaagaggagccgctcctcaggagacaaagtcacagaggctctgaaagccctga 320
Query: 121 gacccggttacatccacctggacacagccaccagtttcctgtggagcacactggactatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccggttacatccacctggacacagccaccagtttcctgtggagcacactggactatg 380
Query: 181 ctgtgctaagggtgttcacctgcctgtccctcctgccaggcctagattgaaaggacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgctaagggtgttcacctgcctgtccctcctgccaggcctagattgaaaggacacag 440
Query: 241 actctcctgacttgcaaaggctgaacactacgctggcttttaatcctcagaaacaaggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctcctgacttgcaaaggctgaacactacgctggcttttaatcctcagaaacaaggct 500
Query: 301 gccctgttgctatgcagtgagtacttatatatcgataaactactccaagaagcacttcat 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gccctgttgctatgcagtgagtacttatatatcgataaactaccccaagaagcacttcat 560
Query: 361 aaagatacccagcctctgactcatgagccaaataaacacctattctttataaatcatcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagatacccagcctctgactcatgagccaaataaacacctattctttataaatcatcca 620
Query: 421 gtctctaacaattgtctctgtatccatgtcctgggtatccatgggcttatttgaaagata 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctctaacaactgtctctgtatccatgtcctgggtatccatgggcttatttgaaagata 680
Query: 481 gaaagtatctctaaatgaaggtggaggagatgggaagaggctcagtctatgaagcacttg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 gaaagtatctctaaatgaaggtggaggagatgggaagaggctcagtccatgaagcacttg 740
Query: 541 ccctgcaagcatgggaacttgacatttccagtcaccaaggaggtcagagtacatatggta 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 ccctgcaagcatgggaacttgacatttccagtcaccaagaaggtcagagtacatatggta 800
Query: 601 acctgtctcgaggcccagcacttgg 625
|||||||||||||||||||||||||
Sbjct: 801 acctgtctcgaggcccagcacttgg 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
