Query= MSMg01no471_n11.b1 MSMg01no471_n11.b1 CHROMAT_FILE:
MSMg01no471_n11.b1 PHD_FILE: MSMg01no471_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:14 2005
(657 letters)
>mm_chr4_48849837_48850893
Length = 1057
Score = 907 bits (469), Expect = 0.0
Identities = 499/513 (97%), Gaps = 7/513 (1%)
Strand = Plus / Minus
Query: 1 caattagtggagttattgcatttatctatatacctttgcagttacaaatgctactcagtc 60
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 506 caattagcggagttattgcatttatctatatatctttgcagttacaaatgctactcagtc 447
Query: 61 agtaagaaagacttagcacttgggatataccaaaactgtgatgttggttgaccaccaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtaagaaagacttagcacttgggatataccaaaactgtgatgttggttgaccaccaagc 387
Query: 121 tctctcaacaactagaggagaaatagttcaagggtgccatctccttcttaagacaaaaaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 386 tctctcaacaactagaggagaaatagttcaagggtgccagctccttcttaagacaaaaaa 327
Query: 181 gtggtcattatgaaaactttacatctaatacatgatttagagagtgttattgnntcaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 326 gtggtcattatgaaaactttacatctaatacatgatttagagagtgttatagtttcaaat 267
Query: 241 ttaatgaacttaatgaaaactctatgtcatttcacattattggttctagacttattaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaatgaacttaatgaaaactctatgtcatttcacattattggttctagacttattaagg 207
Query: 301 aagacaagagactttctcttttttatttttatttatttatttatttatttatttatttat 360
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 206 aagacaagagactttctctttttt-----tattt--ttatttatttatttatttatttat 154
Query: 361 ttatttatttagtgtaagtacattgtagtatgtcttcagacactccagaagagagcatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttatttatttagtgtaagtacattgtagtatgtcttcagacactccagaagagagcatca 94
Query: 421 gatttcgttttggatggttgtgagtcaccatgtggttgctgggatttgaactcaggaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gatttcgttttggatggttgtgagtcaccatgtggttgctgggatttgaactcaggaact 34
Query: 481 ttggaagaacagtcggtgctcttaaccactgag 513
|||||||| ||||||||||||||||||||||||
Sbjct: 33 ttggaagagcagtcggtgctcttaaccactgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_n11.g1 MSMg01no471_n11.g1 CHROMAT_FILE:
MSMg01no471_n11.g1 PHD_FILE: MSMg01no471_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:14 2005
(624 letters)
>mm_chr4_48673709_48674732
Length = 1024
Score = 1054 bits (545), Expect = 0.0
Identities = 578/589 (98%)
Strand = Plus / Plus
Query: 1 ctcccggtcatggtgggttagtgacagttgaaaccagttgcttggcctgtcagccagctc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctcccggtcatggtgggttagtgacagttgaaaccagttgcttagcctgtcagccagctc 260
Query: 61 cctcgttatgaaatggatatgatcccagccctgtctgcatcagactatatttataaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcgttatgaaatggatatgatcccagccctgtctgcatcagactatatttataaggat 320
Query: 121 tagtgaaagaaaatccactgaaaccaccagaaacattgtcgttaaggcttttaagttaag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgaaagaaaatccactgaaaccatcagaaacattgtcgttaaggcttttaagttaag 380
Query: 181 gcaaagcagccctctttgaaactgaatgcaaacatgggatattagggcaaatacagtgga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gcaaagcagccctctttgaaactgaatgcaaacatggaatattagggcaaatacagtgga 440
Query: 241 aatggtcttgtaatgaggctgtttccacacaggagcatcaaatttgcacagatggctact 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aatggtcttgtaatgaggctgtttccacacaggagcatcgaatttgcacagatggctact 500
Query: 301 accgatactaacagtaggatccaaactcaaagtggccagaattcacataagtgccttact 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 accgatactaacagtaggatccaaactcaaagtggccagaatccacataagtgccttact 560
Query: 361 ctgcattcacacagtcctttgcaagagctgatcatgcagtctggtgggtagagaaaggaa 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcattcacacactcctttgcaagagctgatcatgcagtctggtgggtagagaaaggaa 620
Query: 421 tagttaacactgtctggaggtttgttccacattaggaccacctttactgaaatgtaagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttaacactgtctggaggtttgttccacattaggaccacctttactgaaatgtaagat 680
Query: 481 cagggaccaggaatccctcacttgtagggaggggcccagtctcctgggcggttctgtagt 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 681 cagggaccaggaatccctcacctgtagggaggggcccagtctcctgggcggttctgtggc 740
Query: 541 atgctgcaactaggtgtactccagctccgattgacttagagggcttccg 589
|||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 atgccgcaactaggtgtactccagctctgattgacttagagggcttccg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
