BAC Information

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BAC

Clone NameMSMg01-471O04
Chromosome4 (Build37)
Map Location 44,998,387 - 44,998,933
singlet/doubletsinglet
Overlap geneGrhpr
Upstream geneCcin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e
Downstream geneZbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471O04.T7 (MSMg01no471_o04.b1)MSMg01-471O04.TJ (MSMg01no471_o04.g1)
ACCAG554548AG554549
length728731
length of high quality
(start - end)
551 (54 - 604)521 (83 - 603)
definitionCHROMAT_FILE: MSMg01no471_o04.b1 PHD_FILE: MSMg01no471_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:18 2005CHROMAT_FILE: MSMg01no471_o04.g1 PHD_FILE: MSMg01no471_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCCATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCCAGTACCCTGGTTTGCCGGAGCAGCCTGCTGAGAG
CCAGGGTTCATCTACTAAATAGCACAAAGGCTGTAAGATGCTGGGCTAGC
CATGGCAATCAGGCTTCTGTGGGAAAGGCTGCCCCAGCCTTGGACCCCAG
TTCTGGAAAGCAGGCTACTTCCCACTCTAGAGTTGGCAGCTGAGGATCCC
CCCTCCTTCAGTGCTGCCCCTTCAGAAGCCTGGTGGGAGCTAGGCTGCTG
TCATCTTGCCTGTATACAGAGGCTTTCTGGGGGTGGGGACTAAAGGTTAC
CTGTCTGGACAACCAACAATCCTCTAAGCATGGAGGAGTTCGGTAACCTG
GGGTGCATTCAAGTCTGAGAACCCAAGTGCCCACACCTGTATGCATGCAT
GGAAAACTGGCAGGTCTTGTGGGGCAAGTTGGCAGCTGGCAATGCCACCA
AAAGTCAAATCAGGTAGGGCTGCTTTCCCAGTAGAGGGCTCAGGAGTGAG
GGGACCTCTTGGAGCCCTATCTTCAGAGATGCCACATCCAGTTCTTGGAG
AAGGTCAGTAAGTGGCCGCCATGATGACTGGGACCATATGAAGCCCGTGT
AAGCCAGTCCTCTGGAGTGTGACACTGCTAGAGTGTGGCACTCTAGATCT
CTGAGGGCGGCGCACCGGCTGGTGACTG
TCTTCTACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGGAAGTTGCATCC
TCATGTATGAATTTGTACACACACACCCATATATACATATATACGAAATA
AATATATATATTTTAAAGCTGGATGTTGGACCGGGTGGTATACCACTACG
ATACCACCAGCCTTGTCAGGTGGAGGCAAGAAGATCAAGAGTTCAGGGTT
AGTTTTGGCTACATAGTGAGATCAAGGACAGCCTGGGTTATGAGATCCTG
TTCCCAGACAAGTAACAACAACAAACGTTGGAGGACTGGTACTACCTGGC
TTATAGACTTACTACAAAACTGAAGTAATCAGGAGAAGAAAATATTAGGG
AAAGGTTAAACATTTAGATAAAGGGACAGAACGGAGTCCAGACACAGACC
TACACGTGTGTGGTGAATTCTTTTTCTTAAAGACAATTCAATGGGAAAAA
GATAACCTTTTTAGCAAATGGCACTAAACCAATTGCGAAAGCCGAAACAG
CAACAGCTCATGCATCCCTCGTAGCACATTACAAACGTTAACTCAAAACG
GAGCATAGCCCAGGTCTGAGGAGATTGCTCAGTGGTTAGGAACACTGGCT
GCTCTGGCAGAGGACCTGGGTTCCACTCACAGCACCCAGATGCTCACAAC
TACCTATAAGTCTAGCTTCAGGAGATCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_o04.b1 MSMg01no471_o04.b1 CHROMAT_FILE:
MSMg01no471_o04.b1 PHD_FILE: MSMg01no471_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:18 2005
         (551 letters)



>mm_chr4_44998183_44999133
          Length = 951

 Score = 1019 bits (527), Expect = 0.0
 Identities = 542/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccagtaccctggtttgccggagcagcctgctgagagccagggttcatctacta 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccagaactctggtttgccggagcagcctgctgagagccagggttcatctacta 264

                                                                       
Query: 65  aatagcacaaaggctgtaagatgctgggctagccatggcaatcaggcttctgtgggaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagcacaaaggctgtaagatgctgggctagccatggcaatcaggcttctgtgggaaag 324

                                                                       
Query: 125 gctgccccagccttggaccccagttctggaaagcaggctacttcccactctagagttggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgccccagccttggaccccagttctggaaagcaggctacttcccactctagagttggc 384

                                                                       
Query: 185 agctgaggatcccccctccttcagtgctgccccttcagaagcctggtgggagctaggctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctgaggatcccccctccttcagtgctgccccttcagaagcctggtgggagctaggctg 444

                                                                       
Query: 245 ctgtcatcttgcctgtatacagaggctttctgggggtggggactaaaggttacctgtctg 304
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 445 ctgtcatcttgcctgtatacagaggcagcctgggggtggggactaaaggttacctgtctg 504

                                                                       
Query: 305 gacaaccaacaatcctctaagcatggaggagttcggtaacctggggtgcattcaagtctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaccaacaatcctctaagcatggaggagttcggtaacctggggtgcattcaagtctg 564

                                                                       
Query: 365 agaacccaagtgcccacacctgtatgcatgcatggaaaactggcaggtcttgtggggcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaacccaagtgcccacacctgtatgcatgcatggaaaactggcaggtcttgtggggcaa 624

                                                                       
Query: 425 gttggcagctggcaatgccaccaaaagtcaaatcaggtagggctgctttcccagtagagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttggcagctggcaatgccaccaaaagtcaaatcaggtagggctgctttcccagtagagg 684

                                                                       
Query: 485 gctcaggagtgaggggacctcttggagccctatcttcagagatgccacatccagttcttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctcaggagtgaggggacctcttggagccctatcttcagagatgccacatccagttcttg 744

                  
Query: 545 gagaagg 551
           |||||||
Sbjct: 745 gagaagg 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)