Query= MSMg01no472_b19.b1 MSMg01no472_b19.b1 CHROMAT_FILE:
MSMg01no472_b19.b1 PHD_FILE: MSMg01no472_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:38 2005
(532 letters)
>mm_chr4_12892493_12893425
Length = 933
Score = 884 bits (457), Expect = 0.0
Identities = 509/529 (96%), Gaps = 7/529 (1%)
Strand = Plus / Plus
Query: 5 gaattcatctgttcaggtatctggtactaggatgccgttcgtcaggaaatttctgattac 64
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 gaattcatctgtacaggtatctggtactaggatgccattcgtcaggaaatttctgattac 270
Query: 65 tgattcagtatgtttatttgttatttgtctctttaggttttctatttatatttgatttct 124
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 271 tgattcagtatctttgtttgttatttgtctctttaggttttctatttatatttgattcct 330
Query: 125 tcttggttccacgaccaaaaaaaaatgtttctaggaatatacccatatttatataaattc 184
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 331 tcttggttccacgaccaaaataaa-tgtttctaggaatatacccatatttatataaattc 389
Query: 185 ttccatttcttctagttattcagtttgttggcatataatttccatgatagcctattacag 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 390 ttccatttcttctagttattcagtttgttggcatacaatttccatgatagcctattacag 449
Query: 245 tcttttctgttttagtttataccccc-tcctcattttggtatttgttcactttcctaaat 303
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 450 tcttttctgtttta-----tacccccctcctcattttggtatttgttcactttcctaaat 504
Query: 304 ctagaaaatcactactctcttttgttaatgtttttcctattgcattttggtccatatatc 363
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ctagaaaatccctgctctcttttgttaatgttttttctattgcattttggtccatatatc 564
Query: 364 atctatctagtatttattattcccttcattctactaactttgtacttaatttatacttat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctatctagtatttattattcccttcattctactaactttgtacttaatttatacttgc 624
Query: 424 ataatttgaaatactttgggttatttagttaaaatgattcttttaatgcaggcagttatt 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataatttgagatactttgggttatttagttaaaatgattcttttaatgcaggcagttatt 684
Query: 484 agttcaaacatcactccatactatatcagcccatttgtaactttaacaa 532
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttcaaacatcactccatactatatcagcccatttgtaactttaacaa 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_b19.g1 MSMg01no472_b19.g1 CHROMAT_FILE:
MSMg01no472_b19.g1 PHD_FILE: MSMg01no472_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:38 2005
(554 letters)
>mm_chr4_13043241_13044194
Length = 954
Score = 719 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Minus
Query: 183 atatctaccatacctgatgctgtgcaatgtacgctaactacattatctcagttaatcttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 atatctaccatacctgatgctgtgcaatgtacgctaactacattatctcagttaatcttc 895
Query: 243 acaacaggcctacaaagtgcacacaataattaaaccccattctacagaagaagatccaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 acaacaggcctacaaagtgcacacaataattaaaccccattctacagaagaagatccaga 835
Query: 303 aggtctgagaaactgagaagcctcattgttaataaatactgaagtggtgtttgaattgag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aggtctgagaaactgagaagcctcattgttaataaatactgaagtggtgtttgaattgag 775
Query: 363 gtccccataactgtggagccttcatttttaaaagccagactactgtggtgcttgatacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gtccccataactgtggagccttcatttttaaaagccagactactgtggtgcttgatacac 715
Query: 423 ctgtaagcagtatttgtgcacatctactgtcacccaaaaataatatgacatcagatatcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctgtaagcagtatttgtgcacatctactgtcacccaaaaataatatgacatcagatatcc 655
Query: 483 tagaaacacaaagagaaattgtctacagctttcctggggctcttcggcagccctggagct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tagaaacacaaagagaaattgtctacagctttcctggggctcttcggcagccctggagct 595
Query: 543 gtttcacttaat 554
||||||||||||
Sbjct: 594 gtttcacttaat 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
