BAC Information

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BAC

Clone NameMSMg01-472D04
Chromosome4 (Build37)
Map Location 20,072,580 - 20,072,964
singlet/doubletsinglet
Overlap genenone
Upstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472D04.T7 (MSMg01no472_d04.b1)MSMg01-472D04.TJ (MSMg01no472_d04.g1)
ACCAG554788AG554789
length766764
length of high quality
(start - end)
565 (44 - 608)500 (73 - 572)
definitionCHROMAT_FILE: MSMg01no472_d04.b1 PHD_FILE: MSMg01no472_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:45 2005CHROMAT_FILE: MSMg01no472_d04.g1 PHD_FILE: MSMg01no472_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAATTTTATTCAAATAATTTTAGGAAGAAAGTTTTTAGAAATGGTC
TTAGTTGCTAGAAATATGTAATAAAGTTAGAATAAAAAATAGAATGCGCC
CATTCCCCAGAATAGTAAGTAAAGCCTGCATAGTAAGAAATACAATAAAT
TTTCATAATCACACTAGAAATATAATAGACTTGGGACGATTTTGTGTTCA
AGGAAAAACATTTAGGTCCAAGGATAAAGTCACAAGTGTGCACTATGATA
AGGCAAGGCCATGTAAAAACTGTTGCTTTGAACTTTTAATGAGTATATTA
TGATGAAACACTGCTTTGAACTTAATATTAACATCCTTATATAACTCCCA
TTTTATGTAACATTTTATCTCTGAAATAATTTTGTAAAGAACTTTATTTT
TCTAAGAAGGTAAAAAAAGACCAGAAAAAAGAAATAAAGTTGGTTGGTTG
TTGGTTGACTGTTTTGGCTTGGGGAGCTCTGCCCCAACCATTCATCCATC
CACCCACCGATCCATCCAAATGTGCATGTCTGTTTGCCTATATGTTTACA
TGTAGGGTTTATGTGTATGTATGTAAACATGCATGAATACTTGTGGAGTT
GATTTTACAGATGGTTGGGCCCGGCCAGAGTGTGGGTATATGAATGATTG
AATGTATATGTGTCTGTGCATATTTGCCTATACAAGCATCTTAATTCTTT
TTTCCCTCCTCTCCCG
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAGTCGGAGAAAAATGTGTTATCAAG
AGAAGTACATTGATATCCACTGTAGCCCTGTTGGGAGACAGGGATTTGAG
ACTGTGTCTCAAGAGGGGTAAACGTCATAATTTTATGGGGAAGTGTATAA
AAACTCCTCAGAACCATTTGCTTCAGTTCAAAAATGGAATTTTTAGAAAT
TAAGACATCAGCTGGGCGTGGTGGCACATGCCTTTAATCCCAGCACTCGG
GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAACCAGGACTACACAGAGAAACCCTGTCACGAAAAA
ACAACAAAAAAAAAAATCAAAATGTATCTTTAGAATCTAACCAGATAGAG
AAAGTAAGAGAGACGGAGAGAGATCATAAGGCATGTGGTCTAAAGGTTTA
AAGTTTTTGTTGTTATTGTCATTTTTACTTTTCCTGGNGGTTGTATATAA
ACTTCCTAGGAAGTTAATCAGTGAATCAAGAATAACCCTAATTATGATTT
AGACCTTAAAGTTCTCTCCAAAGGCTAGTGTCTCTACCTGATGAGAGTGT
TAGGAAAAGATGGAAAGGGCGCAGAGACTCTAGTACGTTGTGTGCGATAT
TGTATGAACTTATCCCCTCTATCACCCCCTTCTGGTTCGTCGTCTTTTAC
TTCTTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_d04.g1 MSMg01no472_d04.g1 CHROMAT_FILE:
MSMg01no472_d04.g1 PHD_FILE: MSMg01no472_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:45 2005
         (500 letters)



>mm_chr4_20072578_20073477
          Length = 900

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/392 (97%), Gaps = 7/392 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagtcggagaaaaatgtgttatcaagagaagtacattgatatccactgtagccctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatagtcggagaaaaatgtgttatcaagagaagtacattgatatccactgtagccctgtt 328

                                                                       
Query: 61  gggagacagggatttgagactgtgtctcaagaggggtaaacgtcataattttatggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggagacagggatttgagactgtgtctcaagaggggtaaacgtcataattttatggggaa 268

                                                                       
Query: 121 gtgtataaaaactcctcagaaccatttgcttcagttcaaaaatggaatttttagaaatta 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgtataaaaactcctcagaaccgtttgcttcagttcaaaaatggaatttttagaaatta 208

                                                                       
Query: 181 agacatcagctgggcgtggtggcacatgcctttaatcccagcactcgggaggcagaggca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 agacatcagctgggcgtggtggcacatgcctttaatcccagcactcgggaagcagaggca 148

                                                                       
Query: 241 ggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaaccagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaaccagga 88

                                                                       
Query: 301 ctacacagagaaaccctgtcacgaaaaaacaacaaaaaaaaaaatcaaaatgtatcttta 360
           |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 87  ctacacagagaaaccctgtcacgaaaaaa-------aaaaaaaatcaaaatgtatcttta 35

                                           
Query: 361 gaatctaaccagatagagaaagtaagagagac 392
           ||||||||||||||||||||||||||||||||
Sbjct: 34  gaatctaaccagatagagaaagtaagagagac 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)