BAC Information

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BAC

Clone NameMSMg01-472J07
Chromosome4 (Build37)
Map Location 72,703,999 - 72,704,428
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1, Aldoa-ps2, EG384113, LOC667713
Downstream geneLOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472J07.T7 (MSMg01no472_j07.b1)MSMg01-472J07.TJ (MSMg01no472_j07.g1)
ACCAG555080AG555081
length748763
length of high quality
(start - end)
515 (52 - 566)430 (77 - 506)
definitionCHROMAT_FILE: MSMg01no472_j07.b1 PHD_FILE: MSMg01no472_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:16 2005CHROMAT_FILE: MSMg01no472_j07.g1 PHD_FILE: MSMg01no472_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCNATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAGTTATGTCTCCAGCACCATGTCTGTCTGTGTACCAC
AATGCTTTCTGCCATGACTAAATCTCTGAACTATAAGCCAGTCCCAAGTA
ATGCTTTTTTTTTTTAAATAAGTGTTAGCATGGTCATGGTGTGTCTCTTC
ACGGGAATAGAAACCCCTAAGATACCCACATTGGTACCCAGACCTATACA
ACAAATAGTACTACATGTGCAGAGGAATTAAATTATATATTTAGTAGATT
AACCACATCTCTTGGCACATCATGGTATATAACTATTGTTCCTGAAAGTG
CTAAATTTTAATGCCTATTTATTAGAACCACCAGAAGCAGTTCGATTTTA
GCTGGGAAGGCCAGCCGCAGTACAGCTTTCTCTTCCATTTCTATTTTGGC
CTCGGGTCTAATAATTCTCCAGAATTTTTCCATATTTTATTTCAAAGGGA
TCTTCATTATGCTCCTTTTCCAGAAGCACTGCATCGTCTCACTCTATTGA
TTATATTAAGCTGCTGGCACAAAGTGAGCAGATCATAACAAATCCTCTAG
ACTTGATGATAAAGACAGGGTCATCAGAGGAATGGAAGTTCATTGCACCA
AACTTCAATAGTTTTTTATTAAACGGGAATTTCTAAAAAACAGGGATGGC
CAAAATGAAAAATTTCTTTTTAAATACTGGGGAACTATTACTTTTGTG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCTCAGACTGGTACAGATTC
CATTTTATGAGGTTTCAATATAGTGACACTTGCAAAGTCACAAGCCCTTC
ATTTAAAAAAAAATAGCATTTTTTTCCTTCAGGTTCCTCTTTCTGGTTGG
ATCTATGTGTTCATTTTTGGAGAATGACTCATTGCCAAGATGTTACCTAG
CTCCAGTCTCTGCTTGGTTTTGTATTCACAGCAGAAACACATTTAACAAA
AGACACTTTTATTCCTTGTTATTTATTATCTCAGTTAGCCAGTGCTTACA
GATTTCATTTCAGTGTTGACAATAACTGACTTTTCAAGATGAGGCTGAGT
ATTTTGACTTGTAAGTATCATTTAATTGATACTTAAATGATAATTTGACA
TCACAGAGCTCAATGTGGAAGTATAAAGGAAGTTGCAATTGTAATGAAGG
TGAGAATTCTTTCTTACTAAGCAAACTTCACAAGTATTTTCCTGGATAAA
TTCAGGTCTTCTTATGCCACCACAGGGTTGTTAAATCCACCGATGAAATA
ACCTCAAACGAGACACCCTCTGGACTGTTTTAGGGTTCTTTGGCTATGCC
AATTTTTTTTTTCTTTTTTTAGATGTAAACTCTATCCCCACCAATTTATC
CGGTTATTTCTCGTTGCTCTATATAGTTCTTCATCCCCGCCATTCTGCCC
CCGTTTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_j07.g1 MSMg01no472_j07.g1 CHROMAT_FILE:
MSMg01no472_j07.g1 PHD_FILE: MSMg01no472_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:16 2005
         (430 letters)



>mm_chr4_72703799_72704628
          Length = 830

 Score =  754 bits (390), Expect = 0.0
 Identities = 420/430 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttctcagactggtacagattccattttatgaggtttcaatatagtgacacttgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttcttctcagactggtacagattccattttatgaggtttcaatatagtgacacttgcaaa 571

                                                                       
Query: 61  gtcacaagcccttcatttaaaaaaaaatagcatttttttccttcaggttcctctttctgg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 570 gtcacaagcccttcatttaaaaaaaaatagcattttttcccttcaggttcctctttctgg 511

                                                                       
Query: 121 ttggatctatgtgttcatttttggagaatgactcattgccaagatgttacctagctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttggatctatgtgttcatttttggagaatgactcattgccaagatgttacctagctccag 451

                                                                       
Query: 181 tctctgcttggttttgtattcacagcagaaacacatttaacaaaagacacttttattcct 240
           ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 450 tctctgcttggttttgtattcactgcagaaagacatttaacaaaaggcacttttattcct 391

                                                                       
Query: 241 tgttatttattatctcagttagccagtgcttacagatttcatttcagtgttgacaataac 300
           || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggtagctattatctcagttagccagtgcttacagatttcatttcagtgttgacaataac 331

                                                                       
Query: 301 tgacttttcaagatgaggctgagtattttgacttgtaagtatcatttaattgatacttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgacttttcaagatgaggctgagtattttgacttgtaagtatcatttaattgatacttaa 271

                                                                       
Query: 361 atgataatttgacatcacagagctcaatgtggaagtataaaggaagttgcaattgtaatg 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct: 270 atgataatttgacatcacagagctcaaggtggaagtataaaggaagttgtaattgtaacg 211

                     
Query: 421 aaggtgagaa 430
           ||||||||||
Sbjct: 210 aaggtgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)