BAC Information

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BAC

Clone NameMSMg01-472K14
Chromosome4 (Build37)
Map Location 24,913,638 - 24,914,071
singlet/doubletsinglet
Overlap geneGpr63
Upstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik
Downstream geneFhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K14.T7 (MSMg01no472_k14.b1)MSMg01-472K14.TJ (MSMg01no472_k14.g1)
ACCAG555142AG555143
length779872
length of high quality
(start - end)
433 (76 - 508)64 (82 - 145)
definitionCHROMAT_FILE: MSMg01no472_k14.b1 PHD_FILE: MSMg01no472_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:22 2005CHROMAT_FILE: MSMg01no472_k14.g1 PHD_FILE: MSMg01no472_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTCATATATTTGCGGCGGTAAACGAATCACTTTCAAACAGGATCCGN
GGAATTCAAGGTCACACTAATCTACAAGTGAGTTCCAGGGCAGGGCTACA
CAGAGAAACCCTGTCTCTAAAAAAAAAATCAAATAAACAAATGAACGAAC
TTCAAAATAATTGGTTTTCCCATTCATCCTTATACAATTTTAAGAATGGG
TGGCAAGAGTTGTGAATATTTTAACTTGCACATCAAACTTTATATCCATA
TAGAAATGATTGCTGATTTTCAGAGCCTCACTCAACCCCTAGAAGCCCAC
ATTCTGTTCTCTTTTCATAATTGCAACTATTTTAGGTGCTACTATGATTG
GATCAGAGGCCTCCCATTTTCGGCATCCCTTATTTCTCACACCTACAGAA
GTTACTAATTTAAGGTCAAATTCTTCTTTGTCATATATTACGTTCACTAA
GATGTGCCTTATTTCCAATGTGAAAAGCAAATTATTATGCCTTATTTCCT
TATATGAAGTGAAGCTTGTCTCATTACCACAAGGATAATATTAACATTTG
AGCGGTAACCCCTACCAGTTTGAAGTTTCAATGCTGCTTATTAATAAAGA
CAGTTTTTCTACCTGGACTTCCCAATTCCTTAAGGGTAATATCTAAACAA
GGTTGTTTTTTTTTCTTAAATCTTCCTTTATTTCTAAAATGTTATTTCCC
CCTCCTACCAATCTTCTTTGTAGAATTTTACACCACCTTCCTGAAAACAT
TATCGAACATTCTCAATAATTTGTATGTN
NAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCACATATTTAGATCCTG
ATAGCAAATGCCATGGAGAAATGGCATATTGAAAGAAGTCATATTTTAAT
TTATAATTGGATATTATATTTTCCGGAGGAAATGTATTATTATGTCTGGC
GCTGCAGAGATGCCTTTGTCGTCACCGATCCCTGACGGTTCTTGTGGAGC
CTCTTTTTGCACGTCCCTGACTTCGCTCTGTTCGCTCCCTACTGCCCCCC
CCCCCTCCAAGCCGCCCTTTTTCTCTTTTCAGACCTGTTCTCCGCCCCTT
CTCTTGTCCGTTATTTTTTTCCCCCTCCCTCCCCTTTTGCCCTTCTTTCT
TTCCCCCCTCCCTTTTATTGCTCTTCCCCCTCCCCGCCTTTTCCTCTCCC
TCACCTCCTTCTCCCCCTTCTATTCCCCTTCTTTCCACTCTCCTTCTCCT
TCCTTCTTCCTCTCACCCCTCCTCATTTTTGTCCCCCCTCCCCCTCCCAC
TAATATTTCCCCCCCTCGTTCACCCCACCTCTCTTTGTTCCCTCCCCCAC
TTTATACTCCCCCCCACTCTCCTCCTCCTATCTTTTTTCTCCCCCCCCCT
TCTTTATTCATGTTTCTCTCCCTCCCCTTTCCCACCCCCCCACGCTCCGT
CTTTTACTTTTCTCTTCTACCCCCCCCCCCCTGTCTCTCCACTCTTCCCT
TTCCCCCCTTCACACCTGTTCCCTTTTCTCCTTTTCTTCCCCCCTTTTAT
CTTCATCTTTCCCTCTCTTTTTCTTTCTCTTCTTTTCTTCACCTCTTCCC
CTTTCCTCTCCCATCTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k14.b1 MSMg01no472_k14.b1 CHROMAT_FILE:
MSMg01no472_k14.b1 PHD_FILE: MSMg01no472_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:22 2005
         (433 letters)



>mm_chr4_24913439_24914271
          Length = 833

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgagttccagggcagggctacacagagaaaccctgtctctaaaaaaaaaatcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 200 aagtgagttccagggcagggctacacagagaaaccctgtctctaaaaaaaatatcaaata 259

                                                                       
Query: 61  aacaaatgaacgaacttcaaaataattggttttcccattcatccttatacaattttaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacaaatgaacgaacttcaaaataattggttttcccattcatccttatacaattttaaga 319

                                                                       
Query: 121 atgggtggcaagagttgtgaatattttaacttgcacatcaaactttatatccatatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 atgggtggcaagagttgtgaatattttaacttgcacatcaaactttatatccatagagaa 379

                                                                       
Query: 181 atgattgctgattttcagagcctcactcaacccctagaagcccacattctgttctctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgattgctgattttcagagcctcactcaacccctagaagcccacattctgttctctttt 439

                                                                       
Query: 241 c-ataattgcaactattttaggtgctactatgattggatcagaggcctcccattttcggc 299
           | | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 ctacaagtgcaactattttaggtgctactatgattggatcggaggcctcccattttcggc 499

                                                                       
Query: 300 atcccttatttctcacacctacagaagttactaatttaaggtcaaattcttctttgtcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcccttatttctcacacctacagaagttactaatttaaggtcaaattcttctttgtcat 559

                                                                       
Query: 360 atattacgttcactaagatgtgccttatttccaatgtgaaaagcaaattattatgcctta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atattacgttcactaagatgtgccttatttccaatgtgaaaagcaaattattatgcctta 619

                         
Query: 420 tttccttatatgaa 433
           ||||||||||||||
Sbjct: 620 tttccttatatgaa 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)