BAC Information

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BAC

Clone NameMSMg01-472N02
Chromosome4 (Build37)
Map Location 65,677,983 - 65,846,808
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N02.T7 (MSMg01no472_n02.b1)MSMg01-472N02.TJ (MSMg01no472_n02.g1)
ACCAG555262AG555263
length756758
length of high quality
(start - end)
586 (46 - 631)554 (76 - 629)
definitionCHROMAT_FILE: MSMg01no472_n02.b1 PHD_FILE: MSMg01no472_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:34 2005CHROMAT_FILE: MSMg01no472_n02.g1 PHD_FILE: MSMg01no472_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,677,983 - 65,678,564)(65,846,254 - 65,846,808)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTTCTCCTAGATGATAGAGTGTTCACCAGTGATGCATATAAGT
CACATATCTTTGTTCAGTTATAAAAATATCCCTCACTCATCTACAGGGAC
TCTTAGTTTCTTGTGTAGGGATGGAGGGGCACAGCTGATAGCTCCTGCAG
TAAGAGCTGTGTGTGCAGAGGCATCATTAAGGTAGATATGCCAACAACAA
GGCAGTGGTGGTTCCCTAAGCAACTATAATTCAGGTGCTCTACACACCTG
GAGCTTCCTGTATGTGCAGTTAAATTTACAGGAAAGCAATAATAGTAACA
GCATTACCACATATTTATTTATAAAAAGGCCCACACCTGAACAGTCTAAA
GAGCTAAAATAGAAGCCTCACTAAATTTTATAGAAATCTATGTATATATG
TGAAGATGTGACTATATGTGCAGATGTATTAGAATTGAAATCAGGATATA
GATATGCTTACACTGGAGTTAACAACAGCCAAGGGAAACATAACTATATG
TTACTTCGTCCATTTCAATCAACCAGGACCAAGGCCAGCAACATTAGGAA
TTCTACTGCCTTCTTGGGTTTCCTATAGTCAGCAGCCTCACACACTAGAA
ACTGTGCTTGCCCAACCCACGGAGGACTTATATTCTTAGATTCACTAGTT
TCTGGAGGCATTATCTTAGAGTTGTCATTTCCGAATTTGCAGCCACCAGT
TACTGA
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGA
ACTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGCTTTAAAGGCGG
GCACCACTACTGCCCGGCCACAAGTTGTTAATGAAATTATCTGGACTTCC
AGTAGTGTCTCTCTACTTATAAATCCATCAATGTTGGAACCTTTGGACCC
AAGCTAATTGGGGCAGATAGGAAAGCAATCTGGATCTACTATTGACAAAC
CAGTGGCCCATTTCTTTGCCCTTCTTTATTCCTCCTCCAGGGTGGACTCA
TTGCACTTCTCCTCCTGCTGTTGGTGTTCACAGTGGCACTGTATGCCCAG
CGACGCTGGCAGAAGCGCCGGCGCATCCCACAGAAGAGTGCAAGTACAGA
AGCTACTCATGAGATTCACTACATCCCATCAGTGCTGCTGGGTCCTCAGG
CCAGGGAAAGCTTCCGATCCTCCAGACTTCAGGCACACAACTCAGTCATT
GGTGTGCCTATCCGCGAAACCCCCATCCTGGATGACTATGACTATGAAGA
GGAGGACGAACCACCCAGGCGAGCCAACCACGTCTCCCGTGAGGATGAGT
TTGGTAGCCAGATGACCCATGCCCTGGACAGCTTGTGAAAGCCAGGAGAA
GAGAAAGTGGAATTTGAGAAGAAAGGCGAGGCCTTTTTAACTCTGGCTTT
TCCTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n02.b1 MSMg01no472_n02.b1 CHROMAT_FILE:
MSMg01no472_n02.b1 PHD_FILE: MSMg01no472_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:34 2005
         (586 letters)



>mm_chr4_65677779_65678764
          Length = 986

 Score = 1094 bits (566), Expect = 0.0
 Identities = 578/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttctcctagatgatagagtgttcaccagtgatgcatataagtcacatatct 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttctcctagatgaaagagtgttcaccagtgatgcatataagtcacatatct 264

                                                                       
Query: 65  ttgttcagttataaaaatatccctcactcatctacagggactcttagtttcttgtgtagg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ttgttcagttataaaaatatccctcactcatctacagggactcttagtttcttgtgcagg 324

                                                                       
Query: 125 gatggaggggcacagctgatagctcctgcagtaagagctgtgtgtgcagaggcatcatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatggaggggcacagctgatagctcctgcagtaagagctgtgtgtgcagaggcatcatta 384

                                                                       
Query: 185 aggtagatatgccaacaacaaggcagtggtggttccctaagcaactataattcaggtgct 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 aggtagatatgccaacaacaaggcagtggtggttccctaagtaactataattcaggtgct 444

                                                                       
Query: 245 ctacacacctggagcttcctgtatgtgcagttaaatttacaggaaagcaataatagtaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctacacacctggagcttcctgtatgtgcagttaaatttacaggaaagcaataatagtaac 504

                                                                       
Query: 305 agcattaccacatatttatttataaaaaggcccacacctgaacagtctaaagagctaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcattaccacatatttatttataaaaaggcccacacctgaacagtctaaagagctaaaa 564

                                                                       
Query: 365 tagaagcctcactaaattttatagaaatctatgtatatatgtgaagatgtgactatatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaagcctcactaaattttatagaaatctatgtatatatgtgaagatgtgactatatgt 624

                                                                       
Query: 425 gcagatgtattagaattgaaatcaggatatagatatgcttacactggagttaacaacagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagatgtattagaattgaaatcaggatatagatatgcttacactggagttaacaacagc 684

                                                                       
Query: 485 caagggaaacataactatatgttacttcgtccatttcaatcaaccaggaccaaggccagc 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 caagggaaacataactatatgttacttcgtccatttcaatgaaccaggaccaaggccagc 744

                                                     
Query: 545 aacattaggaattctactgccttcttgggtttcctatagtca 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacattaggaattctactgccttcttgggtttcctatagtca 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_n02.g1 MSMg01no472_n02.g1 CHROMAT_FILE:
MSMg01no472_n02.g1 PHD_FILE: MSMg01no472_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:35 2005
         (554 letters)



>mm_chr4_65845946_65846900
          Length = 955

 Score =  998 bits (516), Expect = 0.0
 Identities = 545/558 (97%), Gaps = 7/558 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 actctgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccgagtgc 804

                                                                       
Query: 61  tggctttaaaggcgggcaccactactgcccggccacaagttgttaatgaaattatctgga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tggctttaaaggccggcaccactactgcccggccacaagttgttaatgaaattatctgga 744

                                                                       
Query: 121 ct----tccagtagtgtctctctacttataaatccatcaatgttggaacctttggaccca 176
           ||       |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctggaa---agtagtgtctctctacttataaatccatcaatgttggaacctttggaccca 687

                                                                       
Query: 177 agctaattggggcagataggaaagcaatctggatctactattgacaaaccagtggcccat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agctaattggggcagataggaaagcaatctggatctactattgacaaaccagtggcccat 627

                                                                       
Query: 237 ttctttgcccttctttattcctcctccagggtggactcattgcacttctcctcctgctgt 296
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttctttgtccttctttattcctcctccagggtggactcattgcacttctcctcctgctgt 567

                                                                       
Query: 297 tggtgttcacagtggcactgtatgcccagcgacgctggcagaagcgccggcgcatcccac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggtgttcacagtggcactgtatgcccagcgacgctggcagaagcgccggcgcatcccac 507

                                                                       
Query: 357 agaagagtgcaagtacagaagctactcatgagattcactacatcccatcagtgctgctgg 416
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaagagcgcaagtacagaagctactcatgagattcactacatcccatcagtgctgctgg 447

                                                                       
Query: 417 gtcctcaggccagggaaagcttccgatcctccagacttcaggcacacaactcagtcattg 476
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 gtcctcaggccagggaaagcttccgatcctccagacttcagacacacaactcagtcattg 387

                                                                       
Query: 477 gtgtgcctatccgcgaaacccccatcctggatgactatgactatgaagaggaggacgaac 536
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 gtgtgcctatccgggaaacccccatcctggatgactatgactatgaagaggaggaggaac 327

                             
Query: 537 cacccaggcgagccaacc 554
           ||||||||||||||||||
Sbjct: 326 cacccaggcgagccaacc 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)