Query= MSMg01no472_n02.b1 MSMg01no472_n02.b1 CHROMAT_FILE:
MSMg01no472_n02.b1 PHD_FILE: MSMg01no472_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:34 2005
(586 letters)
>mm_chr4_65677779_65678764
Length = 986
Score = 1094 bits (566), Expect = 0.0
Identities = 578/582 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtttctcctagatgatagagtgttcaccagtgatgcatataagtcacatatct 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttctcctagatgaaagagtgttcaccagtgatgcatataagtcacatatct 264
Query: 65 ttgttcagttataaaaatatccctcactcatctacagggactcttagtttcttgtgtagg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ttgttcagttataaaaatatccctcactcatctacagggactcttagtttcttgtgcagg 324
Query: 125 gatggaggggcacagctgatagctcctgcagtaagagctgtgtgtgcagaggcatcatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatggaggggcacagctgatagctcctgcagtaagagctgtgtgtgcagaggcatcatta 384
Query: 185 aggtagatatgccaacaacaaggcagtggtggttccctaagcaactataattcaggtgct 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 aggtagatatgccaacaacaaggcagtggtggttccctaagtaactataattcaggtgct 444
Query: 245 ctacacacctggagcttcctgtatgtgcagttaaatttacaggaaagcaataatagtaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctacacacctggagcttcctgtatgtgcagttaaatttacaggaaagcaataatagtaac 504
Query: 305 agcattaccacatatttatttataaaaaggcccacacctgaacagtctaaagagctaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcattaccacatatttatttataaaaaggcccacacctgaacagtctaaagagctaaaa 564
Query: 365 tagaagcctcactaaattttatagaaatctatgtatatatgtgaagatgtgactatatgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaagcctcactaaattttatagaaatctatgtatatatgtgaagatgtgactatatgt 624
Query: 425 gcagatgtattagaattgaaatcaggatatagatatgcttacactggagttaacaacagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagatgtattagaattgaaatcaggatatagatatgcttacactggagttaacaacagc 684
Query: 485 caagggaaacataactatatgttacttcgtccatttcaatcaaccaggaccaaggccagc 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 caagggaaacataactatatgttacttcgtccatttcaatgaaccaggaccaaggccagc 744
Query: 545 aacattaggaattctactgccttcttgggtttcctatagtca 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacattaggaattctactgccttcttgggtttcctatagtca 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_n02.g1 MSMg01no472_n02.g1 CHROMAT_FILE:
MSMg01no472_n02.g1 PHD_FILE: MSMg01no472_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:35 2005
(554 letters)
>mm_chr4_65845946_65846900
Length = 955
Score = 998 bits (516), Expect = 0.0
Identities = 545/558 (97%), Gaps = 7/558 (1%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 actctgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccgagtgc 804
Query: 61 tggctttaaaggcgggcaccactactgcccggccacaagttgttaatgaaattatctgga 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tggctttaaaggccggcaccactactgcccggccacaagttgttaatgaaattatctgga 744
Query: 121 ct----tccagtagtgtctctctacttataaatccatcaatgttggaacctttggaccca 176
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctggaa---agtagtgtctctctacttataaatccatcaatgttggaacctttggaccca 687
Query: 177 agctaattggggcagataggaaagcaatctggatctactattgacaaaccagtggcccat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agctaattggggcagataggaaagcaatctggatctactattgacaaaccagtggcccat 627
Query: 237 ttctttgcccttctttattcctcctccagggtggactcattgcacttctcctcctgctgt 296
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttctttgtccttctttattcctcctccagggtggactcattgcacttctcctcctgctgt 567
Query: 297 tggtgttcacagtggcactgtatgcccagcgacgctggcagaagcgccggcgcatcccac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggtgttcacagtggcactgtatgcccagcgacgctggcagaagcgccggcgcatcccac 507
Query: 357 agaagagtgcaagtacagaagctactcatgagattcactacatcccatcagtgctgctgg 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaagagcgcaagtacagaagctactcatgagattcactacatcccatcagtgctgctgg 447
Query: 417 gtcctcaggccagggaaagcttccgatcctccagacttcaggcacacaactcagtcattg 476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 gtcctcaggccagggaaagcttccgatcctccagacttcagacacacaactcagtcattg 387
Query: 477 gtgtgcctatccgcgaaacccccatcctggatgactatgactatgaagaggaggacgaac 536
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 gtgtgcctatccgggaaacccccatcctggatgactatgactatgaagaggaggaggaac 327
Query: 537 cacccaggcgagccaacc 554
||||||||||||||||||
Sbjct: 326 cacccaggcgagccaacc 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|