NNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAATCCCGATAAACAGCTTCGGTGAAGTAGCTGGATAT
AAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACA
GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA
ATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTATAT
GATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGTATTGGCATGATCAACATTGTAAAAA
TGCCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA
ATTCGAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCAT
CTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAA
GAACCTCTGGTGGAATCACCATACCTGATCTAAAGCTTTACTACAGAGCA
ATTGTGATAAAAACTGCATGGGACTGGTATAGAGACAGACCAGTAGACCA
ATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGGCACT
TGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATT
TTCAACAATTGGTGCTGGGACAACTGGGTGTTATCATGGAGAAGAATGC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGCCATGACTTGAGTTA
GAACCCAAGTTCTTTTGCCATCAAAGAAGGCAGGTCTCGTGGGACAATCA
TTACTTTGGACTTTAAGGTCTCCTTTACTATTAGAACACACAGAATGAAT
TCAATTGTGCTCCTTCCATTTAGGTGCATATGAAGGGAAATATTCTCTTG
ATTAAGAAATAGCCCAGTTCCACTCTCTAGCAATTGGATTTTATAAATGT
CATTCTGGGTTTTGAAAGATTATATGTAATGAGAAGGGTCAGAACCATAG
CTGTTGCTTTCAGTTATTGCCAAAACTTTTAAGACACTTTAGTATCAGGT
AGAAGAAAAGTACTAAGTAAAAACAAATTGTGATGGTTATTTAAGGGGTT
TCTCTGCTTCTGTAGCAGAAGATCCTGTTTCCTCAGTGAACTAATGTGTA
AGAACAGCTGTTAGAGGAAAACAGACTTTATGAGTCTGGAAGAGACCTGA
AAAACACATGTGTGGGCATTCCACCTGAACTGATGAGAGGAGGCATCTTA
GNTTGGTTTCTTTCTTTTCTTTCCAACCAGAAGTTTATTTTGGGTAAATA
TTTAGTTGCTTAAATTTCCCCCCCACCTCCCTTTAATATTAACTTTAAGA
AGGCTAGACAGGGGGCCCCCCTTTCCCTGGTCCCTGTGGAGGACTTTCTG
AATTTGGCG

Query= MSMg01no472_n12.g1 MSMg01no472_n12.g1 CHROMAT_FILE:
MSMg01no472_n12.g1 PHD_FILE: MSMg01no472_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:37 2005
         (484 letters)



>mm_chr4_27496489_27497371
          Length = 883

 Score =  843 bits (436), Expect = 0.0
 Identities = 472/484 (97%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgccatgacttgagttagaacccaagttcttttgccatcaaagaaggcaggtctcgt 60
           |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 683 ctatgccatgacttgagttagaacccaaattcttttgccatcgaagaaggcaggtctcat 624

                                                                       
Query: 61  gggacaatcattactttggactttaaggtctcctttactattagaacacacagaatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggacaatcattactttggactttaaggtctcctttactattagaacacacagaatgaat 564

                                                                       
Query: 121 tcaattgtgctccttccatttaggtgcatatgaagggaaatattctcttgattaagaaat 180
           ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 563 tcaattgtgctccttccatttaggtgcatataaagggaaatagtctcttgattatgaaat 504

                                                                       
Query: 181 agcccagttccactctctagcaattggattttataaatgtcattctgggttttgaaagat 240
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 503 agctcagttccactctctagcaattgaattttataaatgtcattctgggttttgaaagat 444

                                                                       
Query: 241 tatatgtaatgagaagggtcagaaccatagctgttgctttcagttattgccaaaactttt 300
            ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 gata-gtaatgagaagggtcagaaccgtagctgttgctttcagttattgccaaaactttt 385

                                                                       
Query: 301 aagacactttagtatcaggtagaagaaaagtactaagtaaaaacaaattgtgatggttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagacactttagtatcaggtagaagaaaagtactaagtaaaaacaaattgtgatggttat 325

                                                                       
Query: 361 ttaaggggtttctctgcttctgtagcagaagatcctgtttcctcagtgaactaatgtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaaggggtttctctgcttctgtagcagaagatcctgtttcctcagtgaactaatgtgta 265

                                                                       
Query: 421 agaacagctgttagaggaaaacagactttatgagtctggaagagacctgaaaaacacatg 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 agaacagctgttagaggaaaacagactttatgagtctggacgagacctgaaaaacacatg 205

               
Query: 481 tgtg 484
           ||||
Sbjct: 204 tgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)