Query= MSMg01no472_n19.b1 MSMg01no472_n19.b1 CHROMAT_FILE:
MSMg01no472_n19.b1 PHD_FILE: MSMg01no472_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:38 2005
(433 letters)
>mm_chr4_44572016_44572852
Length = 837
Score = 754 bits (390), Expect = 0.0
Identities = 421/434 (97%), Gaps = 6/434 (1%)
Strand = Plus / Minus
Query: 5 gaattccatgattgcgttctttctctggcttcagtatcctctagaagtgataacccaacc 64
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattccatgattgtgttctttttctggcttcagtatcctctagaagtgataacccaact 578
Query: 65 agaaaatcagatggacagaaaactcagaccatgacccgcagcctgaagtctccacttg-- 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agaaaatcagatggacagaaaactcagaccatgacccgcagcctgaagtctccacttggg 518
Query: 123 ---ggcctttgtctcctggacactggttgggcccttgctttcccagttaccagaagcagg 179
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 ttaggcctttgtctcccggacactggttgggtccttgctttcccagttaccagaagcagg 458
Query: 180 ccctccctcccagtaggcttcctgtaagtgagtcttagagaggcctgtttgaccaacttt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acctccctcccagtaggcttcctgtaagtgagtcttagagaggcctgtttgaccaacttt 398
Query: 240 caaagtggattcgagccacatcaggctggcctgttaatcccgatcacagaatacggtgac 299
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 caaagtggattcgagccacatcaggctggcctg-gaatcccgatcacagaatacggtgac 339
Query: 300 tgtcaccatctcttgtagtgctggacacatggccaccctgccctttgaggcaacttcact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtcaccatctcttgtagtgctggacacatggccaccctgccctttgaggcaacttcact 279
Query: 360 gccttggtgccctgccccaaccatggagtggccacacccctccccaccacagctgggaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gccttggtgccctgccccaaccatggagtggccacacccctccccaccacagctgggaac 219
Query: 420 tgggagcccccaga 433
||||||||||||||
Sbjct: 218 tgggagcccccaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 837
Length adjustment: 9
Effective length of query: 424
Effective length of database: 828
Effective search space: 351072
Effective search space used: 351072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_n19.g1 MSMg01no472_n19.g1 CHROMAT_FILE:
MSMg01no472_n19.g1 PHD_FILE: MSMg01no472_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:38 2005
(425 letters)
>mm_chr4_44356296_44357120
Length = 825
Score = 746 bits (386), Expect = 0.0
Identities = 412/424 (97%), Gaps = 6/424 (1%)
Strand = Plus / Plus
Query: 1 ctgtatagaattgtttagtcaagtcaggtgtgtcggcacacacctttaatcccagcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ctgtatagaattgtttagtcaagtcaggtgtgtcggcacacacctttaatcccagcactt 266
Query: 61 gagagacagaggagtttgaagccgaagccagtcttatctacagagtgagctccaggacat 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 gagagacagaggagtttgaagcc------agtcttatctacagagtgagctccaggacat 320
Query: 121 ccagggctacacagagaaaccctgtctcaaaatacaaaaacaaacaaccaacaagaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagggctacacagagaaaccctgtctcaaaatacaaaaacaaacaaccaacaagaagac 380
Query: 181 tcattcagtcagggaccctgtgtggcagttttgcctgctatagagtcatcaccgccatcc 240
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcattcagtcagggacgctgtgtggcagttttgcctgctgtagagtcatcaccgccatcc 440
Query: 241 tttgctttacactgaacttctgccgacctgccctagacttagcatcagtgttcttctcag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgcacaacactgaacttctgccgacctgccctagacttagcatcagtgttcttctcag 500
Query: 301 cctggcagtctacgtatgcagtgagttctcactgatagtactcggcagccccggagaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggcagtctacgtatgcagtgagttctcactgatagtactcggcagccccggagaact 560
Query: 361 ctcagggtaagtgagagggtaggaaggttccctgtttgaggaatatagatctgaggagat 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagggtacgtgagagggtaggaaggttccctgtttgaggaatatagatctgaggagat 620
Query: 421 ttgg 424
||||
Sbjct: 621 ttgg 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
