Query= MSMg01no473_c22.b1 MSMg01no473_c22.b1 CHROMAT_FILE:
MSMg01no473_c22.b1 PHD_FILE: MSMg01no473_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:08 2005
(492 letters)
>mm_chr4_138370459_138371350
Length = 892
Score = 864 bits (447), Expect = 0.0
Identities = 479/491 (97%), Gaps = 4/491 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagcagaccttcca--ccacgaggacacctggaggacagaaagacccaggacc 61
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagcagacca--cagaccacgaggacacctggaggacagaaagacccaggacc 261
Query: 62 cagccttgggctgaacaggcttctggaagagcaaggggcatctgagtcacaggacacaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagccttgggctgaacaggcttctggaagagcaaggggcatctgagtcacaggacacaga 321
Query: 122 ttagaggaagtggctttgtgaaggtggatcagggaagccttgtctccaaacctctgaagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttagaggaagtggctttgtgaaggtggatcagggaagccttgtctccaaacctctgaagg 381
Query: 182 gctaagggggccagggagatcccagagaaccctctgggcggggtgggtgaaccaacacca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctaagggggccagggagatcccagagaaccctctgggcggggtgggtgaaccaacacca 441
Query: 242 ggtccccagcttttaggtcaggacatctcatgggtcctgggtatagaatgagctgtcatg 301
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 442 ggtccccagcttttaggtcaggacatctcatgggtcctggggaaagaatgagctgtcatg 501
Query: 302 ggagactttcttgtccctatagggcactttctatctgccatttgtcaggaaaggcaatgc 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 ggagactttcttgtccctatagggcactttctatctgccatttgtcaggaaaggcaatac 561
Query: 362 caggaaaaggaacatagggacggagctgggacacaccctacttcctctttcaagccaagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggaaaaggaacatagggacggagctgggacacaccctacttcctctttcaagccaagg 621
Query: 422 aaccttccctttaagggttagaaacacggtgctccgtcaaattaaccactacgatatctc 481
|||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||
Sbjct: 622 aaccttccctttaagggttaaaaacacggcgctctgacaaattaaccactacgatatctc 681
Query: 482 catgttactct 492
|||||||||||
Sbjct: 682 catgttactct 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_c22.g1 MSMg01no473_c22.g1 CHROMAT_FILE:
MSMg01no473_c22.g1 PHD_FILE: MSMg01no473_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:08 2005
(179 letters)
>mm_chr4_138579902_138580480
Length = 579
Score = 342 bits (177), Expect = 6e-99
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 3 gcaaggggcctctctcccatggcacacaccatcagagtgcctaatagttgttgccctagg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaggggcctctctcccatggcacacaccatcagagtgcctaatagttgttgccctagg 266
Query: 63 cttctgcagtgataattaacttctaccttgaaaggtagagagaaagagagagagagaatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctgcagtgataattaacttctaccttgaaaggtagagagaaagagagagagagaatg 206
Query: 123 agaatatattgtatattcatgagtatatgttgtgtatgtttgtatatgtgtgtatat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agaatatattgtatattcatgagtatatgttgtgtatgtttgtatatgtgtgtatat 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
