Query= MSMg01no473_i02.b1 MSMg01no473_i02.b1 CHROMAT_FILE:
MSMg01no473_i02.b1 PHD_FILE: MSMg01no473_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:36 2005
(546 letters)
>mm_chr4_45715283_45716229
Length = 947
Score = 990 bits (512), Expect = 0.0
Identities = 536/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcctttctcttcca-tttctcctctgtggcagggccagcatttgtaacaagat 62
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcccttctcttccaatttctcctctgtggcagggccagcatttgtaacaagat 263
Query: 63 ccagtgattggattcagtctgactcacgcctttgcctgaccaagtcaataaactaaacgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagtgattggattcagtctgactcacgcctttgcctgaccaagtcaataaactaaacgt 323
Query: 123 aatggcattgtctcaaaggtgagccaagccagtggagatattgtggtggccatgaaggtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatggcattgtctcaaaggtgagccaagccagtggagatattgtggtggccatgaaggtc 383
Query: 183 gtttaaaaagactgtggtagggaagaattgactggcagttaactccatgctggaacttag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttaaaaagactgtggtagggaagaattgactggcagttaactccatgctggaacttag 443
Query: 243 attcagtccttgctcccagtcaaaatctatggagacaccggatctgaccccttcctgccc 302
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 gttcagtccttgctcccagtcaaaatctatggagacaccggagctgaccccttcctgccc 503
Query: 303 atcatggaattcctctaagagcctttgcttgaaactctgctggggcgtggtcgggctcct 362
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 gtcatggaattcctctaggagcctttgcttgaaactctgctggggcatggtcgggctcct 563
Query: 363 ctcagaactgccctgggtgtgacgctcttcctttctgacccttctgccttttctgctctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcagaactgccctgggtgtgacgctcttcctttctgacccttctgccttttctgctctg 623
Query: 423 cttccacagatgtccacactgaggccatgttggaaggttctcctgctctattcctctcct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttccacagatgtccacactgaggccatgttggaaggttctcctgctctattcctctcct 683
Query: 483 agagcctcttctcatcttcccagcagtctcttctagtagatctccggtagagggaagagg 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 agagcctcttctcatcttcccagcagtctcttctagtagatctccagtagagggaagagg 743
Query: 543 cagc 546
||||
Sbjct: 744 cagc 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_i02.g1 MSMg01no473_i02.g1 CHROMAT_FILE:
MSMg01no473_i02.g1 PHD_FILE: MSMg01no473_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:36 2005
(555 letters)
>mm_chr4_45867963_45868917
Length = 955
Score = 959 bits (496), Expect = 0.0
Identities = 517/524 (98%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 33 gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 896
Query: 93 catgagtgaacgctaggaggcgagctctccaagg-aaaaaaatcagaggaagaggactgc 151
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 895 catgagtgaacgctagggggcgagctctccaaggaaaaaaaatcagaggaagaggactgc 836
Query: 152 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 776
Query: 212 ttattttaaatatataaataccaaatgctttcgtgtgtaatatttcatttaataatgtag 271
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 775 ttattttaaatatataaataccaaatgctttcgcgtgtaatatttcatttaataatgtag 716
Query: 272 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 656
Query: 332 taataaaaattttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 391
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taataaaatttttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 596
Query: 392 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 536
Query: 452 aaatttgttgtctgaactttatagaataggatatctgagccggcaacaacttaagcccca 511
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 535 aaattggttgtctgaactttatagaataggatgtctgagccggcaataacttaagcccca 476
Query: 512 aacaaaatccaaacggaggacagagagaaataaaactgtgtggc 555
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aacaaaatccaaacggaggacagagagaaataaaactgtgtggc 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
