NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCATGGTTCTTTCCCAGCTTTTCTTCTTAGTATTATCTTCTGAT
ACAGGAACTCATTTTCATGAGTCTGTTCATAAAGACTATTTACTGACTTC
CTTAATTACTGATGTTGGGTTCTAGCTCACTGGCCCTTGTTATACAGTTT
TAAACCCTAGGTATTCTGTAGTAGTTTAAATTCAAAGAGCTTTAAGCCTT
GAAAAGATTATGAAAGACTACTAAAATTTTACATAGTTTGAAATCAACTT
CAACTACTCTCCAGTCGTCAAATTATCCTCTATTATTTATGTCATCAATC
CTTAAGACAAACAAAAGAATCCAATAAGTATGCTTAAGTTGCCTTTAAAA
TTACCAGATGCCCCTGTTGTTTAACAATACTGTTTAACAGTGTTTCACTT
TAGATGATATAAACACATGGAACTGTGGAATACTTTGTACTTAGGGGAAT
TATAAATTCCCATGCTGCCTGTGTAATAACTGCCATATATTTTAGGTGAG
TGAGAGCAGCCTGTCATCTTTCACTCCCCCACTTTCTGGAATAAATACAT
CAGAGTCATTGGAAAGTAACTCGAAGAAGAATGCATGGAAGAATGCTCTT
CTCCTCTCTTCTCTTCTCTTCTCTTCTCTTCCCCTTCCCTCANCTCTCAT
CCCATCACATCCCTTCTCCTCTCCTCCCTTTTCATCTCCTTTTTTTTTCT
TTTCCAACGAAA

NNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGCCTTTACAACATAGAGG
TGCAACAGGGAAGTGGGCTGTCCAGAGCAGGAGCCATTTCTGGCAGCATC
TGTTGGCTGCATCATGAACTTCTGAACACTAGCTTCGAAGAGAGTAAGTC
TTCCCCATNGAAGTTACCAGTAATAGACNAGGCAGATGGAAATTAAGGGA
GAGTANGATGAGAAAAACAGGGGCGCGCCCNNAAGCCGAACCNNNCTGCC
TGGGGTAAGTATTTTTNNNNNNNNNTTGTTTTCTTTAACCCGCNNNNNNN
NCGCCTATTATTTTTAGGGGATGNNNNNTTTTTGGCCGGGGGAAAAACCC
CCCCCCACGGGGGGGTGGGNCNNNTATTGGGGCGGGANNAAACCCCCCCC
CCCCACCCCCCCCCCNNAAAATAAAGTGTGGGGGGGTGCGGGGGTNTTTT
TTTTTTATTTTATTTTCTNNNATTTTTTTTTTTTTTATTACCCCACCACC
CTCCCGGGGCCGACGNGGGGGATNTTTTCTTCTCTCATCAAAAANNACAA
NANNTTTTCCCCGTTTCCTCTCAACCTCCNTTTCTNCCTTATCCACCGCT
CTTGTCTCTTTCGACTTCTCTCTTCCTGCTTTGTTCATCCTNNNNNGGGC
CCTCCTCCTTCTTCTCTTACACTCTTCCCTAACATCGNCNTTATTCTTCC
ACGCTCNTCTCTCNTNTTTAAATTTTCATATCTCCCCAGCCCCTCCTATT
TCCCTTCCCCTCCCCCTTCCCG

Query= MSMg01no473_j23.b1 MSMg01no473_j23.b1 CHROMAT_FILE:
MSMg01no473_j23.b1 PHD_FILE: MSMg01no473_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:46 2005
         (579 letters)



>mm_chr4_80932077_80933055
          Length = 979

 Score = 1073 bits (555), Expect = 0.0
 Identities = 570/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggttctttcccagcttttcttcttagtattatcttctgatacaggaactcat 64
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcatggttcttggcaagcttttcttcttagtattatcttctgatacaggaactcat 720

                                                                       
Query: 65  tttcatgagtctgttcataaagactatttactgacttccttaattactgatgttgggttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttcatgagtctgttcataaagactatttactgacttccttaattactgatgttgggttc 660

                                                                       
Query: 125 tagctcactggcccttgttatacagttttaaaccctaggtattctgtagtagtttaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tagctcactggcccttgttatacagttttaaaccctaggtattctgtagtagtttaaatt 600

                                                                       
Query: 185 caaagagctttaagccttgaaaagattatgaaagactactaaaattttacatagtttgaa 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 599 caaagagctttaagccttgaaaagattatggaagactactaaaattttacatagtttgaa 540

                                                                       
Query: 245 atcaacttcaactactctccagtcgtcaaattatcctctattatttatgtcatcaatcct 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 539 atcaacttcaactactctccagtcgtcaaattatcctcaattatttatgtcatcaatcct 480

                                                                       
Query: 305 taagacaaacaaaagaatccaataagtatgcttaagttgcctttaaaattaccagatgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taagacaaacaaaagaatccaataagtatgcttaagttgcctttaaaattaccagatgcc 420

                                                                       
Query: 365 cctgttgtttaacaatactgtttaacagtgtttcactttagatgatataaacacatggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctgttgtttaacaatactgtttaacagtgtttcactttagatgatataaacacatggaa 360

                                                                       
Query: 425 ctgtggaatactttgtacttaggggaattataaattcccatgctgcctgtgtaataactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgtggaatactttgtacttaggggaattataaattcccatgctgcctgtgtaataactg 300

                                                                       
Query: 485 ccatatattttaggtgagtgagagcagcctgtcatctttcactcccccactttctggaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccatatattttaggtgagtgagagcagcctgtcatctttcactcccccactttctggaat 240

                                              
Query: 545 aaatacatcagagtcattggaaagtaactcgaaga 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 aaatacatcagagtcattggaaagtaactcgaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)