NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCTTTTGAACTTCCATAACCTGGCATTTTCTTTTGCTGCCTCATAAA
ATCTTTTAATTCCTTTGGTGAACCAGTGATCTCTCTTCAGGATCTTCTTT
TCATTTTCTTACTTTATAAAAAGCACTTGGAATATTTACTTCCCACCTCC
AGCACAAACTGTCCTCCGAGAAACCATGTGTGCTTGCTGTTTTTTTTCTT
TCTCCCGCACTAGTCACTCCTATTCTGTCCATCCTTAAGATCCGAAGTCT
CAAGTATCCCCAAAAGCAGTACCTATTTTATACTATTTCTTCTGTTAAAT
CAATAGATGGTCAGTAATAACATTTTTATCTCCAGTTCATTCTGAATGCT
ATCTCGTTTCAGATACAAAGGTGTCCACTTGGTCTTTCCATCTATCTTTT
CCATAAAAAGCTCAAATTCTTTTTGAGATCAATGAAAATGCATCAAATGA
CAAAAAAAAAGTCAAATATTGACTTTGCTTTGAGATGGAAGAAATTGTGA
AATCCTCACTTACTAAATGTACTCTTCCTGCCACCCCTCTCCCTCCCTCC
ATGATAAACTCATCCTATCAGAGTACACATTTCTACATATCTCTCATGCA
TTCATACCCCAGGAGTCACAAACTGTTTCTGGNCATATGTGTATGATATG
GCCATGGATTCCAGATCCCTGCGGTCCACCCACTTGGCCCCTTTATTTTC
TAATCCAC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGGTGATACTTACACCTAT
GAATCCTGATCTCTTTCCTGGGTTTTCTGTCTCCCTGAAGTTGACCAATT
AAAATGATTTCTTTATTGTTTGTATTTCTATTTTTAGATCCTGGATGGTT
TTGTTCATTTCCTTCTCCTGTTTGGTTGTGTTTTCCTGTAATTCTTTAAG
GGATTTTTGTGTTTCCTCTTTAAGGGCTTCTACCTGTTTACCTGTGTTGT
CCTGTATTCCTTTAAGGGAGTTATATATGTTTTTTATATGTCCTTCTATA
TTTTTTTGTTTTTGTTTTTTGGGGTTTGCTTTTTTTTTTTTTTTNTGNNT
TTTTTTTTTTTTTTTTTTTTTTCCCCCTTTTTTTTTCCTTTTTTCTTTCT
CCCTCCTTTCTCTTTTTCTCTTCTCCCTTTCCTTTTTTTTTCTCCCTTCC
TCTCTCTTCCTCTTTCCTTTTTCCCTTTCTCCCCTCTCTTCTCTCTTTCT
CTCTTTTTTTTCTCTTTTTTCTTCTTTTTTTCTCCTCCTTTTCTCCCTTC
TGTTTCCCTCCTTTCTCCCGTTTTCATCTTTCGTTCTCTTTTCTTTTACC
CTCTCTCTTATTTCTTCCCTTTCTTTTTTTTTTTTTCTTTTCTCGTACAC
TACGCCCCTCCTTCCTTCCCTTCTCACCCTTCTCTCTCACCCCCTACTTA
TTCCCTCTTCCACCCCTACATTTCTCTTCCCCAT

Query= MSMg01no473_k20.b1 MSMg01no473_k20.b1 CHROMAT_FILE:
MSMg01no473_k20.b1 PHD_FILE: MSMg01no473_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:51 2005
         (603 letters)



>mm_chr4_25573450_25574450
          Length = 1001

 Score = 1079 bits (558), Expect = 0.0
 Identities = 590/604 (97%), Gaps = 8/604 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttttgaacttccat---aacctggcattttcttttgctgcctcataaaatcttt 59
           |||||||||||||||  |||   |||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttttgaact--cattataacctggcattttcttttgctgcctcataaaatcttt 260

                                                                       
Query: 60  taattcctttggtgaaccagtgatctctcttcaggatcttcttttcattttcttacttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattcctttggtgaaccagtgatctctcttcaggatcttcttttcattttcttacttta 320

                                                                       
Query: 120 taaaaagcacttggaatatttacttcccacctccagcacaaactgtcctccgagaaacca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 taaaaagcacttggaatatttacttcccacctccagcacaaactgtcctccgagaaaccg 380

                                                                       
Query: 180 tgtgtgcttgctgttttttttctttctcccgcactagtcactcctattctgtccatcctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtgcttgctgttttttttctttctcccgcactagtcactcctattctgtccatcctt 440

                                                                       
Query: 240 aagatccgaagtctcaagtatccccaaaagcagtacctattttatactatttcttctgtt 299
           ||||||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||
Sbjct: 441 aagatccgaagtctccagtatcccccaaagcagtacctaccatatactatttcttctgtt 500

                                                                       
Query: 300 aaatcaatagatggtcagtaataacatttttatctccagttcattctgaatgctatctcg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcaatagatggtcagtaataacatttttatctccagttcattctgaatgctatctcg 560

                                                                       
Query: 360 tttcagatacaaaggtgtccacttggtctttccatctatcttttccataaaaagctcaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcagatacaaaggtgtccacttggtctttccatctatcttttccataaaaagctcaaa 620

                                                                       
Query: 420 ttctttttgagatcaatgaaaatgcatcaaatgacaaaaaaaaagtcaaatattgacttt 479
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 621 ttctttttgagatcaatgaaaatgcatcaaatgacaaaaaa---gtcaaatattgacttt 677

                                                                       
Query: 480 gctttgagatggaagaaattgtgaaatcctcacttactaaatgtactcttcctgccaccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctttgagatggaagaaattgtgaaatcctcacttactaaatgtactcttcctgccaccc 737

                                                                       
Query: 540 ctctccctccctccatgataaactcatcctatcagagtacacatttctacatatctctca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctctccctccctccatgataaactcatcctatcagagtacacatttctacatatctctca 797

               
Query: 600 tgca 603
           ||||
Sbjct: 798 tgca 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1001
Length adjustment: 10
Effective length of query: 593
Effective length of database: 991
Effective search space:   587663
Effective search space used:   587663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)