Query= MSMg01no473_o14.b1 MSMg01no473_o14.b1 CHROMAT_FILE:
MSMg01no473_o14.b1 PHD_FILE: MSMg01no473_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:10 2005
(249 letters)
>mm_chr4_129159253_129159901
Length = 649
Score = 451 bits (233), Expect = e-131
Identities = 245/249 (98%)
Strand = Plus / Plus
Query: 1 accccttgaacttctgactcctaagtgctacaagggtgagccactgcctggatttttcag 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccttgaccttctgactcctaagtgctacaagggtgagccactgcctggatttttcag 260
Query: 61 tactggggattggacttagggctctgtgcatgccgagtgctgcaccagccaagccctgtc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tactggggattggacttagggctctgtgcatgccgagtgctgcaccagccaagccccgtc 320
Query: 121 cccagctcttctctcggcggaatttgaataattagcagttcagagtaattacccaggact 180
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagcttttctctcggcgggatttgaataattagcagttcagagtaattacccaggact 380
Query: 181 acacagtaggtgtaatggtcatatgtactatagaacagcacattttgcagttcatgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagtaggtgtaatggtcatatgtactatagaacagcacattttgcagttcatgcctt 440
Query: 241 actgataat 249
|||||||||
Sbjct: 441 actgataat 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_o14.g1 MSMg01no473_o14.g1 CHROMAT_FILE:
MSMg01no473_o14.g1 PHD_FILE: MSMg01no473_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:11 2005
(478 letters)
>mm_chr4_129333180_129334057
Length = 878
Score = 853 bits (441), Expect = 0.0
Identities = 456/463 (98%), Gaps = 4/463 (0%)
Strand = Plus / Minus
Query: 20 tgcctcccaagcactgggattataggtgtgctccaccactgcctagcaggtctttgttag 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tgcctcccaagcactgggattataggtgtgctccaccactgcctagcaggtctttgttag 819
Query: 80 aaggcaaatgtataggctaaggttgctcattccttggtgcgagctcgggt----tctctc 135
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 818 aaggcaaatgtataggctaaggttgctcattccttggtgcgagctcgggttctctctctc 759
Query: 136 tctctctctctctctctctcgggttctctctctctgtctctctctctctctgtctctctc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctctctctctctctctctcgggttctctctctctgtctctctctctctctgtctctctc 699
Query: 196 tctgtgtctctgtctctctccttttctgacgtgcttacatacaggaagccagatttgagc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 698 tctgtgtctctgtctctctccttttctgacgtgcttacatacaggaagccagaggtgagc 639
Query: 256 atacctagactaggttgcctttgtatttgtaacatgccaacggtattctaagctgtagat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atacctagactaggttgcctttgtatttgtaacatgccaacggtattctaagctgtagat 579
Query: 316 gagcaaaggactattttggaaagtctacaaaattggtcagagcatctcgggttgtgaatg 375
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gagcaaaggactactttggaaagtctacaaaattggtcagagcatctcgggttgtgaatg 519
Query: 376 ggtcagtccaagcttctcctgactttttctgcctttcctgtcttcctctagagccgagtc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggtcagtccaagcttctcctgactttttctgcctttcctgtcttcctctagagccgagtc 459
Query: 436 ctccaatagatgaagttattaacactccaggagtagttgatcg 478
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctccaatagatgaagttattaacactccaggagtagttgatcg 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
