NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGTCCGCG
GAATTCTGCACTTCCCCATCTGGCCCTGGGCCTTTTCTGGTTGGAAGACT
TTTAATAACTGCTTCTATTTTCTTAGGCGTTATAGGCCTGGTAGATAGTT
TACCTGACCTTGATTTAATTTTGGTATGTGGTATCTGTCTAGAAATTCAT
CTGTTTTGTTTAGATTTTCCAGTTTTGTGGAGCACAGTCTTTTGAAGTAA
AACCTAATTTTTGGACTTCCTCAGTTTCTGTTGTTTTATCTCCCTTTTCA
TTTCTGACTTTGTTAATTTGGATCCTGTACCTGTGCCTTTTCCTTAGTTT
AGCTAAAGGTTTACCTATCTTGTTGATTGTTGCAAAGAATCAGCTCTTGG
TTTTGTTGATTCTTTATGTTGTTCTCTTTGTTTCTAATTGATTGATTTTA
GACTGGAGTTTGACTATTTCCTGTGATTTACTTCTCTTGGGTATATTTGC
TTTTTTGTTTTGTTTTGTTCTAGAACTTTAAGGTGTGCTGTTAGGTTGCT
AGTATGAGAACTCTCCAGTTTCTTTATGAAGGCACTTAGTGTGTGCCGGA
AGTGGGTGCGGCCGCAGGCCCCGTGAAACCCACTTGTTTACTGCCTTGCC
CGAGCATGTGCAGTGAGGCTGCATGCGTGGGCTGCCTGCAAGGCTGGACT
GTTCCTCGTGATCCAGN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGGAAAATGCAGCTTTTTTTTTCT
TGGAAAATGCGCATACACTACACTAAACACACGCACGCACACGCGCGCAC
TCGCGCGCACACACACACACACTTTATGCATATTTTCAGGGTTTCACACA
TCCCTATTTCAGGCCTGTCTATGTATGGCCACTGACTAAACAGGGAGTTG
CATTTTATTGAAGCAGTTTCGGGGAGGATTTTTATAATCAGATAAAAATA
AGAAGGAGAGTCACTCATTATGTCAACCCTCCAAATCACTCAGCCTTTCA
ACCAGGCTGCTTTCCCACTTACAGAGATCTCTTGTGTGAAGTTCTGGGGG
TGGGAGTGGATGGAGGCTCCCTCAGCTCATCAAAAAATACTATTTCTTGA
TTAAGTCAATGTTTATCCAACAAAAGGCAAAGAAGAATGTGGACTGTTAC
CTATGTTGCCGGGGGCTGTAGGACTGGCTATCCCAAGCTCAGGCTGGGCT
TCAACTGTCCACTGTGGTTTTACTTTCCACTTAACAAAGAGATTCCTAAT
GCAGAACACCCAGGTAGGAAGTCAGATACAGGACAGCAAGGGTTTCCAAT
ATGCTATTTTCCCGAAAACACAAACACAAGCTGCTCTGCCTTGGCCAAGC
TTTGAAGCTAAGCGTGTCGCCTGAAAAAAAAGGGTAA

Query= MSMg01no474_f19.g1 MSMg01no474_f19.g1 CHROMAT_FILE:
MSMg01no474_f19.g1 PHD_FILE: MSMg01no474_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:47 2005
         (509 letters)



>mm_chr4_40310108_40311016
          Length = 909

 Score =  791 bits (409), Expect = 0.0
 Identities = 488/541 (90%), Gaps = 45/541 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggaaaatgcagctttttttttcttggaaaatgcgcatacactacactaaaca----c 56
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 169 aatggaaaatgcagctttttttttcttggaaaatgcgcatacactacactaaacatgcgc 228

                                                                       
Query: 57  acg----cacgcacacgcgc----------gcactcgcgcg--------------cacac 88
           |||    ||||||| |||||          |||| ||||||              |||||
Sbjct: 229 acgcacacacgcacgcgcgcgtgcgcgcgtgcacgcgcgcgcacacacacacacacacac 288

                                                                       
Query: 89  acacacacactttatgcatattttcagggtttcacacatccctatttcaggcctgtctat 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acacacacactttatgcatattttcagggtttcacacatccctatttcaggcctgtctat 348

                                                                       
Query: 149 gtatggccactgactaaacagggagttgcattttattgaagcagtttcggggaggatttt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtatggccactgactaaacagggagttgcattttattgaagcagtttcggggaggatttt 408

                                                                       
Query: 209 tataatcagataaaaataagaaggagagtcactcattatgtcaaccctccaaatcactca 268
           ||||||||||||||| ||||||||             ||| |||||||||||||||||||
Sbjct: 409 tataatcagataaaagtaagaagg-------------atgccaaccctccaaatcactca 455

                                                                       
Query: 269 gcctttcaaccaggctgctttcccacttacagagatctcttgtgtgaagttctgggggtg 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcctttcaaccaggctgctttcccacttacagagatctcttgtgtgaagttctgggggtg 515

                                                                       
Query: 329 ggagtggatggaggctccctcagctcatcaaaaaatactatttcttgattaagtcaatgt 388
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggagtgggtggaggctccctcagctcatcaaaaaatactatttcttgattaagtcaatgt 575

                                                                       
Query: 389 ttatccaacaaaaggcaaagaagaatgtggactgttacctatgttgccgggggctgtagg 448
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 576 ttatccaacaaaaagcaaagaagaatgtggactgttacctatgttgccgggggctgcagg 635

                                                                       
Query: 449 actggctatcccaagctcaggctgggcttcaactgtccactgtggttttactttccactt 508
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 636 actggctatcccaagctcaggccgggcttcaactgtccactgtggttttactttccactt 695

            
Query: 509 a 509
           |
Sbjct: 696 a 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)