BAC Information

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BAC

Clone NameMSMg01-474I16
Chromosome4 (Build37)
Map Location 50,333,788 - 50,334,256
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474I16.T7 (MSMg01no474_i16.b1)MSMg01-474I16.TJ (MSMg01no474_i16.g1)
ACCAG556580AG556581
length716847
length of high quality
(start - end)
469 (76 - 544)43 (68 - 110)
definitionCHROMAT_FILE: MSMg01no474_i16.b1 PHD_FILE: MSMg01no474_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:02 2005CHROMAT_FILE: MSMg01no474_i16.g1 PHD_FILE: MSMg01no474_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCC
GCGGAATTCACAGAATTCCCGGATATTTGCACATAAGATATACATAATTA
GCACATTTCATTTGCCTTGATATTTTCATAAAAATCAGGTTCAAGACCCA
GGTAAATAAAGAAATATATAATAAAGGAGCCCAGTGTTCACTATTATGAA
GAGGAATTAAAATAAAAGATTTGGAAGATTGCGTTTAATACCAGGAGACT
TTGAGTGGGGGTTGCAGAATGAGAGAGAATGAGATAGGTAGTGCCAGATA
ATTAAGGAGATAGCCAGATTTATTCTAGTCCTCAAGTAGTGCAAGAAAAA
GGTCAGATGAGGTTCACATCAACCCACTTACTACCTATGAGCCCGTTTAA
TTCACATTTTCTTTGCTATTTGTCTTCACTTGTGTGTTATGGAAATCACT
TAAATATGCTTTCAAGTTCAATTTTTTTCCTTGGTTCCCTTTAGTAGAAG
TTGTTTGCTTCCCTCTCTAGGAGCACAGTTATTCTTGGATTAAGAAGCTG
CTCTTCTCTAATAGTACTTATCTCATATATTTAAACTAGTTTATGAAGTA
CGTGTTCTTATTTATTTTCCTAGTATTGCTTTCTCCTTGGATTTTTCTTG
ATTTTTCCAGAGAAGTTATATGCTAGTCATTTCATTACTTCTTCTTCCGT
TTGTCATCATACCCTT
CCAGATGCTGTGGTAGGCCGGGGGCGCCTGTTTCAGACTTTGGGTGACCT
ATAGAAGTTACGAGAGATTCTCTGTTTAGCTCTGTACTCAAGGATGATTG
AGGGAAGTAGAGTAAGGCGCATATAGAGGAGAGAGTGTNTTTTTTTTTNN
TTTTTTTTTTTTTTTGGTTGTTTTTTGTTTTTTTTTCTTTTTTTTCTTTT
CCTCTTCCCTTCCCCCCCTCCCTCCCCCTTCCCCGCCCCCCTTTTTTTTC
TTCCCCCCTTCCCTTGTCCCCTCTCTCCCCTCCCCCCTACCCCCCCCCCC
CCCCCCCCGCCCTTTCGCCTCCCTTTCCGCCCCCCCCCGCCTCCCCCTCC
CCCCCTTTTTTTTTTCCCCCCCCCCCTCCTCCTCCCCTTCTCGCTCTCCC
TCCCCTCCTCCCTCCCCCTCTTCCCCCTCTCCCCTTCCTCCCTCCTCCTC
CTCCCTTCCTTCCCCTCCCCTCCTTTCCCCCTTCTCCTCCCTCTCTCCCC
CTTGCCTTCCTTCCTCTTTCTCCCCTTCCCCTCTCCCCCTCCTCTTCTTT
CCCTCCCCCTTCCCCCCTCCCTTCCTCCCCCTTCTTTTTCCCTTCTCTCC
CCCCCTCCCCCTTCTCCTTTTCCTCTCCTTCTCCTTCCTCCCCCCCTCCT
CTCCGCCTCTGCCCCCCTCTTTTCCTCTCCTCTTCCGCTCTCCTCCCTCC
TTCCTTCCTTCCCTCTCCCCCCCCCCCTCCTTCCTCCCCTTTTTCTTTTC
GTCTTCCTTTCCCTTCTTTCCTCCTTCTCTCTCACGTGCGTCCCTTTCTC
CTTCTCCTCTCCGCCCCTCTCTCGCTCCTATCTTCTCTTCCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_i16.b1 MSMg01no474_i16.b1 CHROMAT_FILE:
MSMg01no474_i16.b1 PHD_FILE: MSMg01no474_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:02 2005
         (469 letters)



>mm_chr4_50333588_50334456
          Length = 869

 Score =  861 bits (445), Expect = 0.0
 Identities = 463/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcacataagatatacataattagcacatttcatttgccttgatattttcataaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcacataagatatacataattagcacatttcatttgccttgatattttcataaaaat 260

                                                                       
Query: 61  caggttcaagacccaggtaaataaagaaatatataataaaggagcccagtgttcactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggttcaagacccaggtaaataaagaaatatataataaaggagcccagtgttcactatt 320

                                                                       
Query: 121 atgaagaggaattaaaataaaagatttggaagattgcgtttaataccaggagactttgag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagaggaattaaaacaaaagatttggaagattgcgtttaataccaggagactttgag 380

                                                                       
Query: 181 tgggggttgcagaatgagagagaatgagataggtagtgccagataattaaggagatagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggttgcagaatgagagagaatgagataggtagtgccagataattaaggagatagcc 440

                                                                       
Query: 241 agatttattctagtcctcaagtagtgcaagaaaaaggtcagatgaggttcacatcaaccc 300
           |||   |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacaaacctagtcctcaagtagtgcaagaaaaaggtcagatgaggttcacatcaaccc 500

                                                                       
Query: 301 acttactacctatgagcccgtttaattcacattttctttgctatttgtcttcacttgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttactacctatgagcccgtttaattcacattttctttgctatttgtcttcacttgtgt 560

                                                                       
Query: 361 gttatggaaatcacttaaatatgctttcaagttcaatttttttccttggttccctttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttatggaaatcacttaaatatgctttcaagttcaatttttttccttggttccctttagt 620

                                                            
Query: 421 agaagttgtttgcttccctctctaggagcacagttattcttggattaag 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagttgtttgcttccctctctaggagcacagttattcttggattaag 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)