ATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAGAATCCGCGGAA
TTCAGAGATTCTCATTCTCAGTTTTTTTCTAATTCCTGTTTGTGGTTCGA
GCTCTTAGTGCTCAGCAGTGCCAGCCATCTTGCTTGCTTGCTGTCACACT
TCTCTGCCATGTTTCCTAGAACCATAAGCCAAGTAAGACTTGTTTCCACA
AGTTGTCTAGTGTTTGTCACAGTGATAGAGTTGTAACCAATACAACATGC
TATACATGTATGAAAATGTCATAATGAAACCCATTGTTTTGTATAATGAA
GATCTATATTCAGTGTTCGTTATCCAAAAAATTAAGTTATATAACAAAAA
CATTGAGAAACATGGAAAAAATAGGTTTTAAGGAACATAGCTTCATTGGA
CAAATCACCTGGTAAAAATACATTTTCGGGAAAATACAAAATGTAAGGAC
CCCTTCATGTTCTCTGTTTTTATGTAATTTAAAAAAATTGGAGGGTATGT
ATGCTAATAAAATATATTTATAATTAAAACAGGTCAAACTTTTATGAGCT
AGTTGGTGTTTTCAGCTTTCGTTTGTTGGTTTTTCATTTAGAATAGCTCC
TTCAGTATTTCCTGGCTTCCTTTGAAAGGCCTTACCAATATTATCAAAGC
TCCACTGTCGAAGCTTACGCTGGTGAAGAACTGCTGGATTGATAAAAAGA
CCCTGACCTCTATAAATCCACCCTCATTACCTT

AAAGAAAGAAGACCACGTTCTCGCGCATGTANGTGCCCTATANATTTTTC
CGAGAANTCTCNNCTGAGGAATACAAATGGCTGAAANGGACCTGAACAAA
ATGTCCAGCATCCTTACCCTCCAAAGAAGGGCATTCAAACAACCCTGGAA
ATTCACCTCCACCCACCCAAAAGCGTAAAACAAAAAATCCCGGGAAACCA
AAAGGTGCCAAAGAGGGGAAAAAAAGAAAATTCCCCCCGGGGGGGGGGGA
GGGGGGTTTAAACCCCCCTGGGAAAACACGGGGGGGCTTTCTAATATTTG
GANAAAACCTTGGGGGGACCCCCAAAACTCCCCCGGGGANATTTTCCAAA
TATTCCCCACAAAAAAAAAAAAACCCCCCCCCCCTTTTTTTCCCCCTTTT
TTTTTAAAAGGCCCTCTTAATAAAAAACACCCCCCTCCCCCCAAAAAAAA
CAAAAAAAAAGGGTTTTTTTTTTCNNNCCCCCCCCCCCNNCCAAAAAAAA
ATTATTTTCTTCCCAAAAAAAACCCNNCCCCCCTCTCTTTCATCCCCCCC
CCCCCCACAAAACACNACCTCTCNCCTCTCCTCCTCTTTTTTTTTTCCCC
CCCCAAAATTAATATTTCAAACCTCTNTNCTAACAAAAAAAAACAACAAA
AACACACATCCTCACCTCTCTTTTCCTTTTCCCCTTTCTCCTTCCTCTCT
CTCATTTTTTAATANAAACCCAACCCTACCCCCCCCTCCCCTTCCCCCNC
CACCCCAACCCCCATAATATTGGGGGGGGGGGGGGG

Query= MSMg01no474_j08.b1 MSMg01no474_j08.b1 CHROMAT_FILE:
MSMg01no474_j08.b1 PHD_FILE: MSMg01no474_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:05 2005
         (523 letters)



>mm_chr4_24459315_24460239
          Length = 925

 Score =  920 bits (476), Expect = 0.0
 Identities = 516/536 (96%), Gaps = 13/536 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttttttctaattcctgtttgtggttcgagctcttagtgctcagcagtgccagccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttttttctaattcctgtttgtggttcgagctcttagtgctcagcagtgccagccatc 260

                                                                       
Query: 61  ttgcttgcttgctgtcacacttctctgccatgtttcctagaaccataagccaagtaagac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttgcttgcttgctgtcacacttctctgccatgtttcctagaaccgtaagccaagtaagac 320

                                                                       
Query: 121 ttg-tttccacaagttgtctagtgtttgtcacagtgatagagttgtaaccaatacaacat 179
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctttccacaagttgtctagtgtttgtcacagtgatagagttgtaaccaatacaacat 380

                                                                       
Query: 180 gctatacatgtatgaaaatgtcataatgaaacccattgttttgtataatgaagatctata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gctatacatgtatgaaaatgtcataatgaaacccattgttttgtataataaagatctata 440

                                                                       
Query: 240 ttcagtgttcgttatccaaaaaattaagttatataacaaaaacattgagaaacatggaaa 299
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttcagtattcgttatccaaaaaattaagttacataacaaaaacattgagaaacatggaaa 500

                                                                       
Query: 300 aaataggttttaaggaacatagcttcattggacaaatcacctggtaaaaatacattttcg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataggttttaaggaacatagcttcattggacaaatcacctggtaaaaatacattttcg 560

                                                                       
Query: 360 ggaaaatacaaaatgtaaggaccccttcatgttctctgtttttatgtaatttaaaaaaa- 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 561 ggaaaatacaaaatgtaaggaccccttcatgttctctgtttttatgtaattaaaaaaaaa 620

                                                                       
Query: 419 ttggagggtatgtatgctaat-----------aaaatatatttataattaaaacaggtca 467
           ||||||||||| |||||||||           ||||||||||||||||||||||||||||
Sbjct: 621 ttggagggtatatatgctaattacagtctaataaaatatatttataattaaaacaggtca 680

                                                                   
Query: 468 aacttttatgagctagttggtgttttcagctttcgtttgttggtttttcatttaga 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacttttatgagctagttggtgttttcagctttcgtttgttggtttttcatttaga 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 925
Length adjustment: 10
Effective length of query: 513
Effective length of database: 915
Effective search space:   469395
Effective search space used:   469395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)