Query= MSMg01no474_k08.b1 MSMg01no474_k08.b1 CHROMAT_FILE:
MSMg01no474_k08.b1 PHD_FILE: MSMg01no474_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:10 2005
(482 letters)
>mm_chr4_27318853_27319736
Length = 884
Score = 832 bits (430), Expect = 0.0
Identities = 464/478 (97%), Gaps = 6/478 (1%)
Strand = Plus / Plus
Query: 5 gaattctcttcctgtcccttagaatatgcaattaatttgaaggaggacagggaggcctta 64
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctctacctgccccttagaatatgcaattaatttgaaggaggacagggaggcctta 268
Query: 65 aaattttaagccaggcatggtggtgcacacctttattcccagaactcaggaggcagaggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaattttaagccaggcatggtggtgcacacctttattcccagaactcaggaggcagaggc 328
Query: 125 aggtagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagacagg 184
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 329 aggtagatttctgagttcaaggccagactggtctacaaagtgagttccaggacagacagg 388
Query: 185 gctatacagagtaaccctgtctagtaaaacaaacaaacaaacaaacaaaacacaaaacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctatacagagtaaccctgtctagtaaaacaaacaaacaaacaaacaaaacacaaaacaa 448
Query: 245 acaaaaaaaatttgtgcttaaactacatgtgtatcttactgttttaccaccagaagtggc 304
|||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 449 acaaaaaa----tgtgcttaaactacatgtgaatcttactgtttcaccaccagaagtggc 504
Query: 305 aaaaaatattaaactgaaattttaggtacaattttagatattcaacctcaggttataaat 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaatattaaactgaaattttaggtgcaattttagatattcaacctcaggttataaat 564
Query: 365 ggcctaggaattaccacagtgaacttgtatctagccaagaatctat--tacagacctctg 422
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 ggcctaggaattaccacagtgaacttgtatctagccaagaatctatattacagacctctg 624
Query: 423 tagacaaaatcatctgtaaggtgtaagagtagttaggcatagttgcacacatctgtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tagacaaaatcatctgtaaggtgtaagagtagttaggcatagttgcacacatcagtaa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_k08.g1 MSMg01no474_k08.g1 CHROMAT_FILE:
MSMg01no474_k08.g1 PHD_FILE: MSMg01no474_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:10 2005
(429 letters)
>mm_chr4_27436123_27436950
Length = 828
Score = 777 bits (402), Expect = 0.0
Identities = 423/430 (98%), Gaps = 3/430 (0%)
Strand = Plus / Minus
Query: 1 tcaatatggcatttacagtttctatattaaccatatttatttttttcttcatattaacaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 628 tcaatatggcatttacagtttctatattaaccatattta-ttttttcttcatattaacaa 570
Query: 61 tttccattccctattttaattcaccaaagtgatatttccttactgggatgttgtttggat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttccattccctattttaattcatcaaagtgatatttccttactgggatgttgtttggat 510
Query: 121 atttgccagaatgctagtaatcccttaaaatattacctcagtaatatttggtgacttctc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atttgccagaatgctaataatcccttaaaatattacctcagtaatatttggtgacttctc 450
Query: 181 atattagacaaaaaagttaaactcacttcacactgaaaaaagtttattaatgcttatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atattagacaaaaaagttaaactcacttcacactgaaaaaagtttattaatgcttatagt 390
Query: 241 g-tctagtttaaagagagaaacatatgtcattacacattacaaattttgtttactgaaat 299
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gct-taggttaaagagagaaacatatgtcattacacattacaaattttgtttactgaaat 331
Query: 300 atttttcaaaataactcatgtccagggtcattggcatattatgaaaatgtacattttcac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atttttcaaaataactcatgtccagggtcattggcatattatgaaaatgtacattttcac 271
Query: 360 taaatatctcttccaaatgttcactgtttctacctgaaaaaataaacattatcctatcat 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taaatatctcttccaaatgttcactgtttctacctgaaaaaataaacattatcctatcag 211
Query: 420 atctgcttta 429
||||||||||
Sbjct: 210 atctgcttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space: 343980
Effective search space used: 343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
