BAC Information

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BAC

Clone NameMSMg01-474K11
Chromosome4 (Build37)
Map Location 107,581,577 - 107,712,740
singlet/doubletdoublet
Overlap geneCpt2, Slc1a7, Podn
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik
Downstream geneScp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474K11.T7 (MSMg01no474_k11.b1)MSMg01-474K11.TJ (MSMg01no474_k11.g1)
ACCAG556665AG556666
length714721
length of high quality
(start - end)
239 (76 - 314)187 (124 - 310)
definitionCHROMAT_FILE: MSMg01no474_k11.b1 PHD_FILE: MSMg01no474_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:10 2005CHROMAT_FILE: MSMg01no474_k11.g1 PHD_FILE: MSMg01no474_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,581,577 - 107,581,815)(107,712,554 - 107,712,740)
sequence
AACCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATTTTCCCCAAGCTGGTCTTGAATTTACCGAGATCTGA
CTACCTCTACTTCCTGGTATTAAAGGTTTGCCCACCACACCTGGCTTCTG
TTAAGCCCTTTGAGGAATACCCACAAGCCCTATGTGAGAGCTCCAGTTCC
CATGCCCTCAAAAGCAACTATTTCTATGTAGACAGAGTCTCACTGATGCT
ACTGCTAGTCTGAAATTTGTAATTTTTCTGTCTCGGTCTTTGGGTAGTCA
GGATTACAAAAATGCTTTTTTAGCCAATGTTAAGGTCAACAGAAAGACTA
AAAGTCTGAAAGTATCTAGGCAACTTGTAATGCCCAAGACAGATGGAAGA
AGGCTGATTTCAACCTACCAAGAAGGCCAGATACAACCTGCTTCATCCAG
CAGGCCTCCCAGAGGACCAGGCTGAAATGGTACCATTGCACGTGTGCCTA
CTGCTCTATAATTCCTTCCCACTCTTGTTCTCTCCATCAAGATAAGCTGG
AAGACATCCCAACTGAGCTCCCAGGTCCTCCCCCACCCCATTTTCTCTAC
ATTTACACTCAGTGAGGCACTCTAGAAGCCCCTTCCTAGAGAATCCAACC
AGACACCCCCCCTTTAGATACCCTAAGCTACAGTCTGAACACTCCCCACA
AAAAATAATGTCTT
NACGATGATAGTGGAGGCCTGGNGGNCGCCTGGTTTCGTACTCTAGGNGA
ACTATAGAAGGTTACTAAAACTCTCCCTCAGCCTGACTTGTCCTGATGTT
CTTTCTATGAGAACATTCACCATGGGAGCCTGAAGTAAGTGGTGAGAAAG
ATCAGTTCATCCATGCTCTTGAAGGAAGTGGAGTGGCCGCGGCGTTGCTG
ATGGGTTAGGCATGAGCTTTGCCGTTTTCTTCAGAGGAGTTCACATATTT
TCCTGCCATCTTCCTGGAGAAGCAGAGGAATGGTGGAAAGCCCGGGTGGG
AGGCAGAGGGAGTCAGTGGTTGGAAGGGGGACGAGACAGGNGCAGGAAGG
GTTTTTTTCCCCCCCCCCCTTCTTTGGTCTGGTCTTTCACCTTCTCTTAT
CACACTTTCTCTCTTCCCCTTTTTTTATTGTCTCTCTTCCTCCTTCCCTT
CACCCCTTTTCCTTCTTCTACCAACCCTTTTCCTCTCTTTAACCTTTTCA
CCGTAGTCTCTATCTCTCTGCTCTCCCCTTTCTTCTTCTCTCTTTCTTCT
CTTTTTTCCTTTCCCTCCTCTCTCCCTCTCCTCTCCTTCTTTTCTCCTCT
TTTTTCCTTTTTACTCCTCTTCTTCAGATCTTTCAACCATACCATCTTTT
TTTTTTTTTTTTGGCGCTATTATCTCTTTCTCTTCTACCTCCCCCTTCCT
CCTTTGCTTCCGTTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_k11.b1 MSMg01no474_k11.b1 CHROMAT_FILE:
MSMg01no474_k11.b1 PHD_FILE: MSMg01no474_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:10 2005
         (239 letters)



>mm_chr4_107581377_107582015
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcttgaatttaccgagatctgactacctctacttcctggtattaaaggtttgcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcttgaatttaccgagatctgactacctctacttcctggtattaaaggtttgcccac 260

                                                                       
Query: 61  cacacctggcttctgttaagccctttgaggaatacccacaagccctatgtgagagctcca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 cacacctggcttctgttaagccctttgaggaatacccacaagccctgtgtgagagctcca 320

                                                                       
Query: 121 gttcccatgccctcaaaagcaactatttctatgtagacagagtctcactgatgctactgc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gttcccatgccctcaaaagcaactattcctatgtagacagagtctcactgatgctactgc 380

                                                                      
Query: 181 tagtctgaaatttgtaatttttctgtctcggtctttgggtagtcaggattacaaaaatg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtctgaaatttgtaatttttctgtctcggtctttgggtagtcaggattacaaaaatg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no474_k11.g1 MSMg01no474_k11.g1 CHROMAT_FILE:
MSMg01no474_k11.g1 PHD_FILE: MSMg01no474_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:11 2005
         (187 letters)



>mm_chr4_107712354_107712940
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagcctgaagtaagtggtgagaaagatcagttcatccatgctcttgaaggaagtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggagcctgaagtaagtggtgagaaagatcagttcatccatgctcttgaaggaagtggag 328

                                                                       
Query: 61  tggccgcggcgttgctgatgggttaggcatgagctttgccgttttcttcagaggagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggccgcggcgttgctgatgggttaggcatgagctttgccgttttcttcagaggagttca 268

                                                                       
Query: 121 catattttcctgccatcttcctggagaagcagaggaatggtggaaagcccgggtgggagg 180
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catagattcctgccatcttcctggagaagcagaggaatggtggaaagcccgggtgggagg 208

                  
Query: 181 cagaggg 187
           |||||||
Sbjct: 207 cagaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)