BAC Information

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BAC

Clone NameMSMg01-474M21
Chromosome4 (Build37)
Map Location 97,522,293 - 97,728,113
singlet/doubletdoublet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474M21.T7 (MSMg01no474_m21.b1)MSMg01-474M21.TJ (MSMg01no474_m21.g1)
ACCAG556779AG556780
length717739
length of high quality
(start - end)		285 (331 - 615)536 (77 - 612)
definitionCHROMAT_FILE: MSMg01no474_m21.b1 PHD_FILE: MSMg01no474_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:23 2005CHROMAT_FILE: MSMg01no474_m21.g1 PHD_FILE: MSMg01no474_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,727,829 - 97,728,113)(97,522,293 - 97,522,828)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGAGAAGCC
GCGGAATTCATTTAATTACCTTCACAGACTCGCTGGGCAGTGGTGGCGCA
TGCCTTTAATCCCAGCACTAGGGAGGCAGAGGCAGGTGGATTTCTGAGTT
CAAGGCCAGCCTGGTCTACAGAGTTAGTTCCAGGACAGCCAGGGCTACAC
AGAGAAACTCTGTCTTGAAAAAGAAAAAAAATCCAAAAAAAAGAAAGAAA
AAAAATTCTCAGGCTTCCACTCTGGGTTGAAGAAACCAAGTTGGGATAAC
CTAGGTAAAGTTTTACCCTTAGNCTTTCTTCTGAGGACATCACAAACAAT
GACTGAAATCAGAATTTTCTAGACTCTTCACTTACTCTTCTACACGATCT
TGTCTTGGTAGAGCAGATTCCTATCCACTTAGTCACACTCATTGTGATAG
ACTCAGAACGGAGCCTGACACTTGAGATATATTTGGTGATTGCACAATAA
ATGGCTGATTAAAGGAGTTTAAAAATTAAGAAAAAACAAGCATAAAACTT
GCCAAGGACAAAAATATGTTTTTGCCCCCTGATGAAGAGCCAGAGAGCAT
GGTGAAAAAATGGTTCTAAGTTAAGACTGCATAGAATGAGATACATGTTT
GTAATCCTTTATGGTATCTGAGTGAAAACTCAGAAGTTAAAGAGGTAAAA
GCTCCTTGTTTTGCTCT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTACTTCAGCCTGTATTGTA
ACAGCCAGCTCTTCCTGATGTTTCTGTGGGCTCAACTGAATGTGAGAAGG
GCTCCACCATTTCTTTCTGTTTGGGCTCTGTAGTCCTCTGCCTTGTATTC
CAGGTGAGCTCCATTCCTGTAGCTGTTGCGATGGCAAAGAACAAAGCAAC
CTAAGGGAGAAAGAGTTTGTTCTGGCTCACAGCTCCTTAGTTCCATTTGC
TGTGACACTGTGAACTTGGTCTTTCTCGCTCTCTAGGATTTGGGTGTTTG
TCCTGCCTGTCTCTTGGAAGGCATGGTCACAAATGACGTAGATAGCCAAT
CTGAACTGTGCAGAGAACCTGTACACAGTCTGGTGGAGTCCTCATCTGGC
CCCATAGAGCTATCTTGGAGAACTCATTCACACAGTCTCTAGTACTATCA
ACTGTCATTCTCATTGGGTATTCAAAGGCACCTCTGACCCAAAAGAAGTT
GAGTGATCTCCCTAAAGGCTTGATTAAGTGGAGGTACATTGCTTGACGAG
TTCATGGCGGTTCAGAATCATTTGCCTGGTGCGGAGGAGGAGAGACAGCT
GTGAACTTAAGTGAAAAGGAAAGCCTAAGTTACACTCCTGCGTGGCGGGG
TGCCCCTGGGCAATTATTAACCAAGTCGATTTTGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_m21.b1 MSMg01no474_m21.b1 CHROMAT_FILE:
MSMg01no474_m21.b1 PHD_FILE: MSMg01no474_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
         (285 letters)



>mm_chr4_97727629_97728313
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaggacatcacaaacaatgactgaaatcagaattttctagactcttcacttactcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgaggacatcacaaacaatgactgaaatcagaattttctagactcttcacttactcttc 426

                                                                       
Query: 61  tacacgatcttgtcttggtagagcagattcctatccacttagtcacactcattgtgatag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 425 tacacaatcttgtcttggtagagcagattcctatccacttagtcacactcactgtgatag 366

                                                                       
Query: 121 actcagaacggagcctgacacttgagatatatttggtgattgcacaataaatggctgatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 365 actcagaacggagcctgacacttgagatatatttggtgattgcacaataaatggctgagt 306

                                                                       
Query: 181 aaaggagtttaaaaattaagaaaaaacaagcataaaacttgccaaggacaaaaatatgtt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 305 aaaggagtttaaaaattaagaaaaaacaagcataaaactttccaaggacaaaaatatgtt 246

                                                        
Query: 241 tttgccccctgatgaagagccagagagcatggtgaaaaaatggtt 285
           ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 245 tttgccccctgatgaagagccagagagcatggtgaaaaattggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no474_m21.g1 MSMg01no474_m21.g1 CHROMAT_FILE:
MSMg01no474_m21.g1 PHD_FILE: MSMg01no474_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
         (536 letters)



>mm_chr4_97522093_97523028
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 531/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtacttcagcctgtattgtaacagccagctcttcctgatgtttctgtgggctcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgtacttcagcctgtattgtaacagccagctcttcctgatgtttctgtgggctcaac 260

                                                                       
Query: 61  tgaatgtgagaagggctccaccatttctttctgtttgggctctgtagtcctctgccttgt 120
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 261 tgaatgtgagaagggctccaccatttctgtctggttgggctctgtagtcctctgccttgt 320

                                                                       
Query: 121 attccaggtgagctccattcctgtagctgttgcgatggcaaagaacaaagcaacctaagg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 attccaggtgagctccattcctgtagctgttgcgatgacaaagaacaaagcaacctaagg 380

                                                                       
Query: 181 gagaaagagtttgttctggctcacagctccttagttccatttgctgtgacactgtgaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaagagtttgttctggctcacagctccttagttccatttgctgtgacactgtgaact 440

                                                                       
Query: 241 tggtctttctcgctctctaggatttgggtgtttgtcctgcctgtctcttggaaggcatgg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcctttctcgctctctaggatttgggtgtttgtcctgcctgtctcttggaaggcatgg 500

                                                                       
Query: 301 tcacaaatgacgtagatagccaatctgaactgtgcagagaacctgtacacagtctggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacaaatgacgtagatagccaatctgaactgtgcagagaacctgtacacagtctggtgg 560

                                                                       
Query: 361 agtcctcatctggccccatagagctatcttggagaactcattcacacagtctctagtact 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcctcatctggacccatagagctatcttggagaactcattcacacagtctctagtact 620

                                                                       
Query: 421 atcaactgtcattctcattgggtattcaaaggcacctctgacccaaaagaagttgagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcaactgtcattctcattgggtattcaaaggcacctctgacccaaaagaagttgagtga 680

                                                                   
Query: 481 tctccctaaaggcttgattaagtggaggtacattgcttgacgagttcatggcggtt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctccctaaaggcttgattaagtggaggtacattgcttgacgagttcatggcggtt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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