BAC Information

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BAC

Clone NameMSMg01-475A05
Chromosome4 (Build37)
Map Location 114,169,863 - 114,170,220
singlet/doubletsinglet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475A05.T7 (MSMg01no475_a05.b1)MSMg01-475A05.TJ (MSMg01no475_a05.g1)
ACCAG556939AG556940
length764740
length of high quality
(start - end)
251 (77 - 327)358 (84 - 441)
definitionCHROMAT_FILE: MSMg01no475_a05.b1 PHD_FILE: MSMg01no475_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:39 2005CHROMAT_FILE: MSMg01no475_a05.g1 PHD_FILE: MSMg01no475_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAACACCG
CGGAATTCCAGCCTTTTTGCCTTCTCTGCCCAGTCATTAGCTGTTCAGCC
TTTTATTAACCTATCAAAGATAATTGAGCAACATTCTTTATACCAAATTA
ATACAGGAGATTCTCCAATATTCATGACAATGTCCATGTCTGGACTGCAA
CTTCATCTTAGGCCACAGAAATCAGCTTCTGAATACACAGAACACAAGAA
CCTCCTACAACTTTGGAGGAAATCTAAAGACAGCATAAAGACCAAGCTTT
TCCACAGTTGTTTCTTATAATGCCTTTTNATANTGTAGAGAGATCAGAAA
TACACAAGAAGGTGCAATTTGGTAAGAAAAGTTATGTGAGCAAGTTTATA
GGTTACCAAAACAAAATTAGTACAGAGAAAGCAGCTCTAATTGTTAAAGA
CATTTGGCTGGTACAATTAAAGAGAAACCATAAATTCTTCACGGAGACAA
TAGAAATGATGTTCCAAAGACAAGACATCAAGCAACAAAGGCTCAAGCTT
ATGAAAATGTCAATTCATTTACCAAGAGAAAGCCTGAGCTGATAATGAAA
CTAAAGGCGTTTCCTGCTTGAAAACAAACAACCCAGAAGAGTGGTCTCAA
AAACTCTCCCTATAGTCCACTATTGTTTTGTCAGCAGAAATTTCTGTGAT
ACCTTCCATTGGCTTAAGACCCCACAATCACTCCCCCTATGTGGCCTCTC
GGCATGTCAACAAN
CCATTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGGTAAGACTGAAC
CTGGAGCACCCTGCCCCCATCTTAACCTTGGCATTCTACTATCTCTTTCT
GATAGTGGTGAGGTGTACTCTTTATGACTAATAATTTTATCTGTGGCTTT
GAACTGAATAGAACTTGGGAGCTGTGACTCAGTTTCTCCTAAATTAGGCC
CAAGAGCTTTCTTGTTTGGAGAGGTAATCAGACTCCAATTTCAGACGTTC
CAAAATACTTTCAGCCCTGGGTGGCTTCAACTGATTAAAGCATTTGAACC
AACTGCTAAATGCCATGGCTTCCAGCCCAGTGGGACCCTGGGAGAATGAC
CTGCCTCCCATGGGTACAGTGAAGAAAGCGTGTTAACAGAGTGACAGGCT
ATATTTCTGTCTCTCAGAGCCTCGAGCACCCCCTCCTCAAGCAGGCCCGG
GGTGTTCCCTTGCCAGCCTCCTTTTCCCTTAGGGTTTTTTTGGAAAACCG
GAGGATTTACATTGGGAAATGGTTTCAACTTCCCCGGACTGATGGTTTTG
GCTTAAATCGCCCTTGTCTTGCCCTCCTAAACCTCGGACGATCGCCCCCC
TCCCTTGTATCCTTACTGTACAACCTGTACTAGTCCCCTACTCCTTTTCT
CTTGCCTAACGATGCTATGCGTTTAATGTCTTTCCCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_a05.g1 MSMg01no475_a05.g1 CHROMAT_FILE:
MSMg01no475_a05.g1 PHD_FILE: MSMg01no475_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:39 2005
         (358 letters)



>mm_chr4_114169663_114170420
          Length = 758

 Score =  685 bits (354), Expect = 0.0
 Identities = 357/358 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataggtaagactgaacctggagcaccctgcccccatcttaaccttggcattctactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tataggtaagactgaacctggagcaccctgcccccatcttaaccttggcattctactatc 499

                                                                       
Query: 61  tctttctgatagtggtgaggtgtactctttatgactaataattttatctgtggctttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctttctgatagtggtgaggtgtactctttatgactaataattttatctgtggctttgaa 439

                                                                       
Query: 121 ctgaatagaacttgggagctgtgactcagtttctcctaaattaggcccaagagctttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgaatagaacttgggagctgtgactcagtttctcctaaattaggcccaagagctttctt 379

                                                                       
Query: 181 gtttggagaggtaatcagactccaatttcagacgttccaaaatactttcagccctgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtttggagaggtaatcagactccaatttcagacgttccaaaatactttcagccctgggtg 319

                                                                       
Query: 241 gcttcaactgattaaagcatttgaaccaactgctaaatgccatggcttccagcccagtgg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcttcaactgactaaagcatttgaaccaactgctaaatgccatggcttccagcccagtgg 259

                                                                     
Query: 301 gaccctgggagaatgacctgcctcccatgggtacagtgaagaaagcgtgttaacagag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaccctgggagaatgacctgcctcccatgggtacagtgaagaaagcgtgttaacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)