BAC Information

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BAC

Clone NameMSMg01-475B01
Chromosome4 (Build37)
Map Location 3,502,990 - 3,503,484
singlet/doubletsinglet
Overlap geneTgs1
Upstream geneLOC100039124, LOC100039141, EG666464, LOC100039044, LOC631371, LOC666513, Tmem68
Downstream geneLyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475B01.T7 (MSMg01no475_b01.b1)MSMg01-475B01.TJ (MSMg01no475_b01.g1)
ACCAG556979AG556980
length7351,185
length of high quality
(start - end)		508 (56 - 563)---
definitionCHROMAT_FILE: MSMg01no475_b01.b1 PHD_FILE: MSMg01no475_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:43 2005CHROMAT_FILE: MSMg01no475_b01.g1 PHD_FILE: MSMg01no475_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGCGCAGCCTGGTCCCATCTTATATTCCATTACCT
ACCAGCATCTAATAGGAGCATAAAAAAGAACTTTACTGAATTAAATGTAC
ACCTGAGCGTTGGGAGTCATTTTTGTCTGCTTCTGTAAAAGCCTGTCTGT
TAGGCGGAGTCAAGGCAGGTCAGGCTGACAGATTTCCTGGCCTGCCAACG
GCATGGAACAAAAAGCTACAACTGAGGCTCAAGGAGAGGGGCTGAACGTT
CGATTAATCTTTGTGGAAGGAACAGGGAGGCCTCCGGATGGGAACAGATA
TCCATTCTCTGTCAGCCATTGTCTGTGCTAGTTTGTGACTTTGTTTCCCA
TGATACTGTAAAGTGTATTAAGGTTATGAGAAATACATTTGGGGCCAGTG
TGGTTCAGGCCTGCAGCCCTCCGGATTTCTAACCTTTGTCTCTGAGTCTT
CTTTTCGGTCTTATAATCATCCTCACTCCCCCACTAGAAGAATGTTCAAC
TCTGTGGACCTGTGCAAATGAGCCTAGTACATTTTTTACATGGTTAATTT
AACATGGCGCCATATTTCCTTCTTGAGGAAACTTTCAAATATCTCCCCCC
AAGTTATCCCTGAACATGAGTACCCTTAAATTTAAATTTGCCCTGGTCTT
TCCCCCTAAGTGCATTTTTTCCCTGGCCGTTTTAN

CTCCTCTCATATCCCTTCCTACTACTCCACTTTCACACCTTCTCTATCCT
TTTCAAAAATAACCTTTACCATCATATCCCACCTTTTTTCTCTAAATATA
TACTTCCCAACCCTTTATATTATCACCGTATCGATCCCCTTCTCATACCC
TTCTTTATCCTTCAATTACCCACACATACCTGTTTACCCTACCCATATAA
CTAGCAGCTCTCTCGACCACATTGTTTCCTTTTTTTTGTTCAGTATGATC
ACTTCTCCCAACAGCTCCTAGCCACCAAACATTTTATTTGCTCCATGTTT
ATTTCCACAGATCTTTTATTTTTATTCTCACACTATCCCAAATACACAAT
TTCAATATCATCCTCTATACACACATCTCACTAATACACGATTCTCATAT
TACAATTTTATTAATTCCCGTTCAGATATCTCACTCTTTGGCACATATTA
CCATAAACTTTATTCAGATTTACCTCAACAATCTTATTATCGATATTCCC
CACTCGACACCCCATTATGAGCTCTATAATTATACTCATAGCGATCGTTC
ACACACCTCCAATTCTCGCGCTTTTTCTCTTCTCTCTTCTCACCATACCC
AGTAACCATATCCCACCCCCACGTATTTTACACCCACTCGCTTCTTCTCC
TACNCTAAAAGTATCCATCACACATCTACCACCACATATAATCAACTATT
AACTCCCATTCGTTTTACACTTATATCTACATACAAATACTAATTAATAC
CCCGCTCTATATTTCTTATCTTTCTATATATCCCTCCCACACCACATATA
TAATACTCTCCTCATCTACTATTTCTCCACCCTCATCAATTTATATAATC
ATATATACACTCACCACATTTCCTTTATTCCCACACATATATTCACCTCT
CTCTTTTTCCTACTTATCACCCTCTTCCTCAACTATCTCACTATTCTTTC
CCCATCTTACCTTTTACAACCACCCCCCTACGAAACTACACATCATNACA
ACCTAAATACCTATATTTCATATTTCCACACCTTTATACTATCACCCCTT
TTTTCCACACCTATTCCACTACTCAGCATACTATCTCTTCTTCACACTAC
TCATATTCTCCCGACATAACCACACATATGTAATCCTCTTCTTATTCAGT
CCTCACTATATACCTATCTCTTTATATATGCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_b01.b1 MSMg01no475_b01.b1 CHROMAT_FILE:
MSMg01no475_b01.b1 PHD_FILE: MSMg01no475_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:43 2005
         (508 letters)



>mm_chr4_3502786_3503693
          Length = 908

 Score =  942 bits (487), Expect = 0.0
 Identities = 493/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcgcagcctggtcccatcttatattccattacctaccagcatctaataggagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattcagcgcagcctggtcccatcttatattccattacctaccagcatctaataggagc 640

                                                                       
Query: 65  ataaaaaagaactttactgaattaaatgtacacctgagcgttgggagtcatttttgtctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ataaaaaagaactttactgaattaaatgtacacctgagcgttgggagtcatttttgtctg 580

                                                                       
Query: 125 cttctgtaaaagcctgtctgttaggcggagtcaaggcaggtcaggctgacagatttcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttctgtaaaagcctgtctgttaggcggagtcaaggcaggtcaggctgacagatttcctg 520

                                                                       
Query: 185 gcctgccaacggcatggaacaaaaagctacaactgaggctcaaggagaggggctgaacgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 gcctgccaacggcatggaacaaaaagctacaactgaggctcaaggagagaggctgaacgt 460

                                                                       
Query: 245 tcgattaatctttgtggaaggaacagggaggcctccggatgggaacagatatccattctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcgattaatctttgtggaaggaacagggaggcctccggatgggaacagatatccattctc 400

                                                                       
Query: 305 tgtcagccattgtctgtgctagtttgtgactttgtttcccatgatactgtaaagtgtatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtcagccattgtctgtgctagtttgtgactttgtttcccatgatactgtaaagtgtatt 340

                                                                       
Query: 365 aaggttatgagaaatacatttggggccagtgtggttcaggcctgcagccctccggatttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaggttatgagaaatacatttggggccagtgtggttcaggcctgcagccctccggatttc 280

                                                                       
Query: 425 taacctttgtctctgagtcttcttttcggtcttataatcatcctcactcccccactagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taacctttgtctctgagtcttcttttcggtcttataatcatcctcactcccccactagaa 220

                          
Query: 485 gaatgttcaactctg 499
           || ||||||||||||
Sbjct: 219 gactgttcaactctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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