CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTATAAGTGTTACCCATAAGTAGCGCATATACAGACAAGCAGGCACAC
AGACATACATACATATTAATTAATTAATTTTTAAAAAGAATGTTCAGTAG
CTGACAGACATATCTGCTCTTTTAACAATTCCTCTCAGGGGAAACTAACC
AAAATCCTGAGAAAATGATATGATTTAAATACCTTCTACTGAATCCCAAC
CCTTAAAGGATTTATTCCACCTTCCAAAGTTATCATACTAAGGACGAAGT
ATGAAACACTTGATTTCAGAGATTTTTTTCATTCAAATCATAACCGGGGA
AAGTGGTCCACGGTCTCTCATCATAGAAAGCTCATCATTATCATGAAGTT
TATTTTTCCCATTCATACAAAAGCCCAGCAGGAAACGATCCGAGACTGAA
ACAGCCATCATGGTGGCAGAGCCCAGGTTCCTTTTGATGTGTTGCTCTGT
AGTGTTCAACATGTTTCAACGCCTTGGTCCTTCAGAAGTAAGGAGGGAGA
ACAGAAAGAAAAGCAAGGAAGAAGACTTCTCAGGGGGGTGGGGAGATGGA
TCAACAGGGTAAAGAGTATGCACTACTCTTGTCGAAGACCCCAGGTCCAG
TCCCTGCACATGCAACAGGGTGTCTACTTTCTATCAGACCTTTTACTCCA
TGGCGAGGGGATACAATGCTTTCCTTCTGGCTCTTATGGGACTTTCTACT
TACAAGAAATATCCCCTCTCTTCATTTATTCCTG

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTGACATATGTATACTC
ATCAACTTTGAATCAGAAAAATCAAGAATGACAGACTTTCACTAATTAAA
GCAATTGTGTATGCATGTGTGTAGGTGCATGCATGTTGAAATCATAGGAC
AACTTTTGGGAATAGGTCCTCTCCTACCAAGTAGATCCCAGTGATCAAAC
TCAAGTCCCAGGCTCAGGGGCAAATCCCACTGAGCCATCTCACCAGTCTC
ATAAAAATATGTTGTGCTTTTATTATAATTAAATATACAGATTCGAGCAG
GAATACAGTACAGGGTGAGTAATCCTTATTCAAAATATATTACAACAAAT
ATACTTCAAATATCAGACTTTGTTCGATCTTGGAATATGTGCAAAAAAAG
TTCCCAACATCTAAATTTTTTTTAACAGNTATGCTCGTCTCAACTCGTAT
TTGTAAAGTAAACATGCTATTCTTAGATTTCTCATGAAGNTATTTACTTT
TTACTTGACAAAGAATTCCTTTTGATGAATTATTTCTTATTATGAAGAAA
AAAAAACTTTCCTCTTAAATTTGGAACCTTCAAACGGGAACCCGTTTTAT
TTACACAAAAACTCCTTTATAATCCCAACCCCCATTGGAACCCCTTATTT
TCTTGGTAAAACCCCCCCCCCTCTCCAAATTCCCGGGCCATAAAAACCCC
CTTTGAATTTGAACCCTTAATACAAAA

Query= MSMg01no475_e21.b1 MSMg01no475_e21.b1 CHROMAT_FILE:
MSMg01no475_e21.b1 PHD_FILE: MSMg01no475_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:02 2005
         (277 letters)



>mm_chr4_94807058_94807734
          Length = 677

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctataagtgttacccataagtagcgcatatacagacaagcaggcacacagacata 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattctataagtgctacacataagtagcgcatatacagacaagcaggcacacagacata 508

                                                                       
Query: 64  catacatattaattaattaatttttaaaaagaatgttcagtagctgacagacatatctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catacatattaattaattaatttttaaaaagaatgttcagtagctgacagacatatctgc 448

                                                                       
Query: 124 tcttttaacaattcctctcaggggaaactaaccaaaatcctgagaaaatgatatgattta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcttttaacaattcctctcaggggaaactaaccaaaatcctgagaaaatgatatgattta 388

                                                                       
Query: 184 aataccttctactgaatcccaacccttaaaggatttattccaccttccaaagttatcata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aataccttctactgaatcccaacccttaaaggatttattccaccttccaaagttatcata 328

                                             
Query: 244 ctaaggacgaagtatgaaacacttgatttcagag 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 327 ctaaggacgaagtatgaaacacttgatttcagag 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_e21.g1 MSMg01no475_e21.g1 CHROMAT_FILE:
MSMg01no475_e21.g1 PHD_FILE: MSMg01no475_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:02 2005
         (409 letters)



>mm_chr4_94627458_94628266
          Length = 809

 Score =  777 bits (402), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactgacatatgtatactcatcaactttgaatcagaaaaatcaagaatgacagactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactgacatatgtatactcatcaactttgaatcagaaaaatcaagaatgacagactttc 260

                                                                       
Query: 61  actaattaaagcaattgtgtatgcatgtgtgtaggtgcatgcatgttgaaatcataggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaattaaagcaattgtgtatgcatgtgtgtaggtgcatgcatgttgaaatcataggac 320

                                                                       
Query: 121 aacttttgggaataggtcctctcctaccaagtagatcccagtgatcaaactcaagtccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttttgggaataggtcctctcctaccaagtagatcccagtgatcaaactcaagtccca 380

                                                                       
Query: 181 ggctcaggggcaaatcccactgagccatctcaccagtctcataaaaatatgttgtgcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcaggggcaaatcccactgagccatctcaccagtctcataaaaatatgttgtgcttt 440

                                                                       
Query: 241 tattataattaaatatacagattcgagcaggaatacagtacagggtgagtaatccttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattataattaaatatacagattcgagcaggaatacagtacagggtgagtaatccttatt 500

                                                                       
Query: 301 caaaatatattacaacaaatatacttcaaatatcagactttgttcgatcttggaatatgt 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 caaaatatattacaacaaatatacttcaaatattagactttgttcgatcttggaatatgt 560

                                                            
Query: 361 gcaaaaaaagttcccaacatctaaattttttttaacagntatgctcgtc 409
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gcaaaaaaagttcccaacatctaaattttttttaacagttatgctcgtc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)