BAC Information

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BAC

Clone NameMSMg01-475J22
Chromosome4 (Build37)
Map Location 80,401,704 - 80,401,950
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131, LOC100040144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J22.T7 (MSMg01no475_j22.b1)MSMg01-475J22.TJ (MSMg01no475_j22.g1)
ACCAG557404AG557405
length846809
length of high quality
(start - end)
247 (76 - 322)276 (80 - 355)
definitionCHROMAT_FILE: MSMg01no475_j22.b1 PHD_FILE: MSMg01no475_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005CHROMAT_FILE: MSMg01no475_j22.g1 PHD_FILE: MSMg01no475_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAGTCCTACATGTCACTATACGANTCACTATATTCAGAGAATCCGCGG
AATTCAATGTTGGTTACTGCTACATATTGGGGAGAGTTCAACTTTGCTCA
CTTTAAGAAATTAGGCTGTGTCAACAACCATTGAATAACTGTAAGATCAA
GGCTTTTACATTGTTGTAGATTTGACAGTGCTTCTGTTCCTATCTTAAAA
TCAGGATTCACTATGTTTAGCACAATGGATTGCTGTTTGATATTATTGTC
AATTTATAAAAGGGCAAGTGTCCAGTCTACAATTATAGAAGAGAACCTAG
TGCAAAGCCAGGAGTGTGTGTGATTTTTTATGTTGAATATCTTTCTAACT
GTGTTTGTCTAGAATACAGAATCAGGACTAGGGCATAGACCTGCTTCACT
ACATGTCTTCTAAAGTACAGCGAATAATAGATACTGGAAAATGCGCCACA
AATAGATAATTACCAAAAGCAATAACATAGCACAACCCTACTAATTGTTT
TCTAACTATCCAGTTTAGGCACAACATTTTTCCACTTCTCCAGGGGGTCC
CATAAACGGTGAAATACCAAAACTTGTTTTCTAACGTCTCTGCCTATACA
TTATAAAAAAACCTTTCTTTGTGTTAAATGCTCCTATCATTTTTCTTTTT
TGTATATCCCGCCTTTTTTTTCTCCGAATACCCTTACAATCTTCCTTCTT
AAACAACTTTTTGATCATGATTGCGCTCAAAAATTTCCATACTCCGCACA
TTCACCCTTATCATCACTTCCTCTCTGCGCTCTCTACTTTTCCTACCCTC
TTCCTCCAATTTCACAATTTCATACTTCTTCCACCTTACCACGTCT
NCCCCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTAATTTCA
TGGGCATGTCATTCTTTAGGTTTGGGAAGTTTTCTTCTATAATTTTGTTG
AAGATATTTGCTGGCCCTTTAAGTTGAAAAATCTTCATTCTCATCAACTC
CTATTATCCATAGTTTTGGTCTTCTCATTCTGTCCTGGATTTCCTGGATG
TTTTGAGTTAGGATCTTTTTGTGTTTTGTATTTTCTTTGATTGTTGTGCC
AATATTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCTTCTCTT
GTATTCTGTTGCTGATGCTTGTATCTATGGCTCTAGATTTCCTTCCCAGG
CCTTTTATTTTCCGCGTTTGCCCCCCCCCACGGGTTCCTCCTCTTGGGCT
AACCCCCCCCTCATCCCATGTCATGGTTCCCTCATTCTTTCCCCCCTTAT
CTTTTTTTTCCTCCCTTTTTCCTTTCCCTCTCCTTTTTTACTTCCTTCTC
CCTTCCTCTTCTGTTCTCGCCCCCTTCTCTTTTCTCTCTTCTTTTCTCCC
TTCCACTTTTTCTATCCTCCCTTTTCTCTCTCTTTCTTTCCCCTTCCCCC
TTCCTTTCTTCTTTTTTTCTCTCCCTTCCCTCCCCCTTTTTCCTTTTCCT
TTTCCTCCTTTATTCATCTCCTCTGTTCTCTACCCCTCTTTCGCTTTTTT
TTCCCCCTTTCCCCCTTTTTTTTTTCTTTCTCCCCGCCTTATCCCCCGCC
TTACTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j22.b1 MSMg01no475_j22.b1 CHROMAT_FILE:
MSMg01no475_j22.b1 PHD_FILE: MSMg01no475_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:28 2005
         (247 letters)



>mm_chr4_80401504_80402150
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggggagagttcaactttgctcactttaagaaattaggctgtgtcaacaaccattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 attggggagagttcaactttgctcactttaagaaattaggctgtgtcaaaaaccattgaa 388

                                                                       
Query: 61  taactgtaagatcaaggcttttacattgttgtagatttgacagtgcttctgttcctatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taactgtaagatcaaggcttttacattgttgtagatttgacagtgcttctgttcctatct 328

                                                                       
Query: 121 taaaatcaggattcactatgtttagcacaatggattgctgtttgatattattgtcaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaaatcaggattcactatgtttagcacaatggattgctgtttgatattattgtcaattt 268

                                                                       
Query: 181 ataaaagggcaagtgtccagtctacaattatagaagagaacctagtgcaaagccaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ataaaagggcaagtgtccagtctacaattatagaagagaacctagtgcaaagccaggagt 208

                  
Query: 241 gtgtgtg 247
           |||||||
Sbjct: 207 gtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)