BAC Information

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BAC

Clone NameMSMg01-475N16
Chromosome4 (Build37)
Map Location 117,958,130 - 117,958,609
singlet/doubletsinglet
Overlap genePtprf
Upstream gene4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a
Downstream geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475N16.T7 (MSMg01no475_n16.b1)MSMg01-475N16.TJ (MSMg01no475_n16.g1)
ACCAG557583AG557584
length7441,013
length of high quality
(start - end)		481 (48 - 528)---
definitionCHROMAT_FILE: MSMg01no475_n16.b1 PHD_FILE: MSMg01no475_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:46 2005CHROMAT_FILE: MSMg01no475_n16.g1 PHD_FILE: MSMg01no475_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATTGCAAGAGGAGCCGCGGAATTCACAGGATTCACACCAGCCT
GGAGGACACGCCCCAGCACACACAGCAGCCTTCAAAGAAGCTTCAGGAGC
AATATTTATTTTTGACTTTCTGCTTCTCTGTAATTTCTAAAATGAAGGTG
TGCCCCTGGATGCCTCCTCGGCTGGCACGCACGGCGCATCCGAGCCCCGC
CCCTTCCTTCTAAAACTATTACTGAGGTCTCACTAGCACTGCGCACGGCC
CTGGTGGGGCAGGGCTCAGTCACCCCCTTATCACCTCATCAGTATTTTCT
TTTACTCCACTGGTACCCACGGGGACCATCCTGCAGCCTCACCCCACACT
CCCAGTCCTGCCACCTGGCTCTTCACTGACTCAGGACTGATGCTCCTCAC
CGTCCACAGACTAACAACCTCCACACACACCTGTCCTTGCTTTCACCTTT
TTAAAAAAGATTTATTTGATGTGTATGAGTGTTTTGCTTGTATTACATAT
GTGTACCATCTCTGTACATGTATGAGGGGGCTCAAGTTCAGAAGAGGGCA
TTATATCTCCTGGAACTGGAGTTAAGTAAAGTCGTGAGCCCCCATGTATG
TGCTTAGAACCAAAACCTCGGGCATTCGCATTTATATTCCTCTGCTCTTA
AATTGCTTGAAATCTTCTCTATCCTTTTGTCTCACTTTCTAAATGGCCCC
CCTTTGGTTAAGTTAATGAAGTCTTCCTACTCTCAAAAAAACCG

TTCTCTTCTTTTTCGCTCCCCCCTCTCTTTTCTTTTCTTCTCTNCTNNTN
CCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCCCGNCGGGNATTCCTAGGCCCAGCCCGGAA
CTGGCATTAGTGGAGAACCCCTTGTTCTGAAAACCAAACCAAAATGGGGT
TGTCCGCCTCTCGGCCAGAATTAATGGTGCCAACCGGGGGGGTAAAGGGA
AAAATTCCCTTAAGGTCTCTCGAAAAAAATCCTCAATTCCCCCCAGGGGG
AAGCGCCTCCCCCAAGGAAGGTGGGGGGGTGTCCCCCCAAAAAAAACGGC
CCCTAACCCCATATATCTCTCTTCACAAACAAAAAAAGGGGGGGGGAAGA
ACTCCCCGTAANAATTCTTGTTGTTTTTTTAAACAAAAAAACAACCACCC
CCCTTTTCTTTTCCAAACTATTTGGGGGGTTGTTTGGAAGAAAACCCCCA
CACCTTGTGTGTGGCCCCGACAAATATCTTCTTCTCTTTCAATAAAGGGG
GGTTTGTGTGGGCCCCGCCCCCTCCCCCCTTTATTAATAGGCGCGGCTCC
TCCTCCCCCTCCGCGCTGCTAATTTAAAAANCAACATTGTGCGCTCCTTC
CCCCTTCCTGGTTTCATGACCACAACTACACACCTTTTCTCTCTCTTCTT
TCCCCTCTCCTCCTCCCTCTCTCTCACTTCCCTTCTCCTGTTTCTCCTTT
CCTATTTCCCTCTCCACCCTCTCCCTCCTTCTCCTCTTTCTTCTTATATT
TTATCCTCTCCTCTTCCTCCTCCTCTCCCTATATTCGCTGCGCTCTCGTT
TGTTCTCCCCTTTTTTCCCTCTCTCCATAATCTATTCACCTCACACCTCT
CCTATCCTCTTTCTGTTTCTCTCTCCCACGTACTCGCCACCTTTACTATT
ACTTACTTCCTATATCTCTGCTCGTCGCCTATTATCCTTCTCCCCGTCAT
CCTCACTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_n16.b1 MSMg01no475_n16.b1 CHROMAT_FILE:
MSMg01no475_n16.b1 PHD_FILE: MSMg01no475_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:46 2005
         (481 letters)



>mm_chr4_117957930_117958809
          Length = 880

 Score =  861 bits (445), Expect = 0.0
 Identities = 472/483 (97%), Gaps = 5/483 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaggacacgccccagcacacacagcagccttcaaagaagcttcaggagcaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaggacacgccccagcacacacagcagccttcaaagaagcttcaggagcaatattt 260

                                                                       
Query: 61  atttttgactttctgcttctctgtaatttctaaaatgaaggtgtgcccctggatgcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttgactttctgcttctctgtaatttctaaaatgaaggtgtgcccctggatgcctcc 320

                                                                       
Query: 121 tcggctggcacgcacggcgcatccgagccccgccccttccttctaaaactattactgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcggctggcacgcacggcgcatccgagccccgccccttccttctaaaactattactgagg 380

                                                                       
Query: 181 tctcactagcactgcgcacggccctggtggggcagggctcagtcacccccttatcacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcactagcactgcgcacggccctggtggggcagggctcagtcacccccttatcacctc 440

                                                                       
Query: 241 atcagtatttt--cttttactccactggtacccacggggaccatcctgcagcctcacccc 298
           |||||||  |   ||   |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 atcagtagctcagct---actccactggtacccacggggagcatcctgcagcctcacccc 497

                                                                       
Query: 299 acactcccagtcctgccacctggctcttcactgactcaggactgatgctcctcaccgtcc 358
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 498 acactcccagtcctgccacctggctcttcaccgacccaggactgatgctcctcaccgtcc 557

                                                                       
Query: 359 acagactaacaacctccacacacacctgtccttgctttcacctttttaaaaaagatttat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acagactaacaacctccacacacacctgtccttgctttcacctttttaaaaaagatttat 617

                                                                       
Query: 419 ttgatgtgtatgagtgttttgcttgtattacatatgtgtaccatctctgtacatgtatga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgatgtgtatgagtgttttgcttgtattacatatgtgtaccatctctgtacatgtatga 677

              
Query: 479 ggg 481
           |||
Sbjct: 678 ggg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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