BAC Information

Click to search

BAC

Clone NameMSMg01-476J11
Chromosome4 (Build37)
Map Location 84,908,875 - 84,909,102
singlet/doubletsinglet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J11.T7 (MSMg01no476_j11.b1)MSMg01-476J11.TJ (MSMg01no476_j11.g1)
ACCAG558145AG558146
length755750
length of high quality
(start - end)
454 (73 - 526)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no476_j11.b1 PHD_FILE: MSMg01no476_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:45 2005CHROMAT_FILE: MSMg01no476_j11.g1 PHD_FILE: MSMg01no476_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAACACGATCCGCGGA
ATTCAGTATTTCCTAACACCCTTCAGATGAAGAGGTAGAACTCTCGGCTC
TGCCTGCACCATGCCTGTCTGGATGCCTGCCATGCTCCCACCTTGATTGT
AATGAACTGAACCTCTGAATCTTTAAGCCAGCCCCAATTAAATGTTGTCC
TTTTAAGAGTTGCCTGGTCATGGTGTCTCTTCACAGCACTAAAACCCCTA
ACTGAGACAATCATCTCTGGAAATAATTAGTAGCTGGGCATGATGTTACA
GCGTTATAATCCCTTTATTTTGGAGGCAGAGGCAGGTGGATCAGGCACTC
ACTCAACATCATCCTTGGGTTATAAAATATTTTTAGAAAAATAATTTTCG
GTGTTATCATTACAACCCACTAGAACAGTGCTTCTTAACCTGTGGGTCGT
GACCCCTTTAAGTGTGAAATGGTCCTTTCTCAGGGGTCGCCCTAAGACCA
TTAGAAAACACAGATATTTACATTATAGCAGCGTCAAAATTACCATGATG
AATTACCAACAAAAAGAATTCTATGGTTGCCGCCACATCCCCACATGAGG
AACTGTATTAAAGGCTGATCGCATAACTTACGTTTACACACACTAACCTT
TTTTATATTTCGGTCCTGCAATAATGAGCGTAACTTTTTACGAATTCCCC
TCCCTCCCATTTTCCCTTTGCACACTACCTTCCGCCCCTCCCCTGTTCCT
CTTCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGGGGACAGAACTGGATCCTCATC
TCTGAAGAATGAATTGCCAAAGAACACATTTTTCTTTCTTTTCTTTTTCT
TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTTTT
TTTTTTTTAAACAAAATGTACTGCCAAAAAGACACGGAGCCATGCTGAAT
TTGCTACACGCACATCACATGGTTAACCACATGTGTGGCTCACAGTTTTG
AGGCTCGGGTTCTTAGCTAATAGTTTCTAAGGGNGAAGGCCAGAGATGGT
TCGTTTTTTCACGTAGCACAGAATCATTATCTCCAGGTCAGAGCTCCGAC
CGAAGCCAAAGCATGAGGTAGCAGGCACAGACTCTGGGCACTTTCCTCCA
CTATCAAAGGTCACAAATGAAGTCATCCCCTATTTATCGTCCTCCACATC
AGTCTGACTGGACCCACGCATAGAATCGGCCAGCTCCTAAACTATTAGTG
TTCTAATCCTCTAATCGATATAGATGAAACAGCCTTTAATAAAGAATTTC
TCCCCGGGCTGGATCTATCATGTAGAGATTGGGCCCTATAAGCCTTTTTT
TACTTTTTAGTCCAGAACCTACCGATGCTGGACGGACTATTCACAGGGGG
TGGTTGTCCCCTTTTTTGATCCGCCCCCCCCCCTGTTTTTTTTTTTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j11.g1 MSMg01no476_j11.g1 CHROMAT_FILE:
MSMg01no476_j11.g1 PHD_FILE: MSMg01no476_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:45 2005
         (242 letters)



>mm_chr4_84908541_84909182
          Length = 642

 Score =  333 bits (172), Expect = 7e-96
 Identities = 219/244 (89%), Gaps = 18/244 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggggacagaactggatcctcatctctgaagaatgaattgccaaagaacacatttttc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tagggtgacagaactggatcctcatctctgaagaatgaattgccaaagaacacatttttc 503

                                                                       
Query: 61  tttcttttctttttcttttcttttcttttcttttcttttcttttcttttcttttctttct 120
           ||||||||||||||||              |||||||||||||||||||||||| ||| |
Sbjct: 502 tttcttttctttttct--------------ttttcttttcttttcttttctttt-ttt-t 459

                                                                       
Query: 121 tttttttttttttt--aaacaaaatgtactgccaaaaagacacggagccatgctgaattt 178
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 458 ttttttttttttttgaaaacaaaatgtactgccaaaaagacacggagccatgctgaaact 399

                                                                       
Query: 179 gctacacgcacatcacatggttaaccacatgtgtggctcacagttttgaggctcgggttc 238
           |||||| |||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct: 398 gctacatgcacatcacacggctaaccacatgtgtggctcacagttttgaggctcgtgttc 339

               
Query: 239 ttag 242
           ||||
Sbjct: 338 ttag 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)