BAC Information

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BAC

Clone NameMSMg01-476K08
Chromosome4 (Build37)
Map Location 13,620,519 - 13,620,710
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K08.T7 (MSMg01no476_k08.b1)MSMg01-476K08.TJ (MSMg01no476_k08.g1)
ACCAG558187AG558188
length773773
length of high quality
(start - end)
192 (85 - 276)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no476_k08.b1 PHD_FILE: MSMg01no476_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:49 2005CHROMAT_FILE: MSMg01no476_k08.g1 PHD_FILE: MSMg01no476_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATCACTGATCCGCG
GAANTCACTATATTTCCTGATCGAACGAGGATNTTCCCAGTAGGCTGGCT
ACAAGTATAAACAGTGAATTAGGAATGAAAGACCATCAATCATATCTCCT
TCAAACAGGCTCCTGCCCTGAGAGTATCCATTATATACTAGAGCCACTTT
AAAAATTTCTATGCAGTTTTCATTGGCAAAAACAAGTAAATTGTCCATAA
TCTGTATGATCCCCATGGAAGTTGCAGTCGTAAAGTCAGATACTTTCTTC
ACTGATACAATGACTCCTCTTTTTTTTTTGGGACGTTGCGTTTCTGTTTC
ACAAATAATCCTTGCTCATACTGTACTTTCTCACTAGGACCCTTACTGAT
AGACTGGTTTACCCATCTGATGGCCGCTCCCACACTATAGTAATCTGGAA
CTACATGTCTCTCCACCTGGATATTTCTGCCCACCACCTCTCTTGTTATT
ACCCGCCCTATTTATGCTCCTCTTCGTTTCTGCCCGCCCCTTCCTTTATC
TATTTTTCTTTTATCCTCCCTATTCTTTCCCTTTCTTCCCTTCCCCTTTT
TCCCTTTCTTTCTCCTTTCCCTTCTCCTTCCTCTCTCTTCCCCTTTTTTT
TTTTCCCCCCTTTTTCCCCCCTTTTTTTTTTTTTCCCCTTTTTTTTCTTT
CCCCCCCCTTTTTCCTCCCTTTCTCTATTTTCCATTCCCTTATTCCCCTT
TATTCCATTTTTTCCATCTCTTT
TCGATGCTCCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCAACAACAATCTAGAGCCCAGNTCCAAGTGTTATACC
TACAACACAACTCCTGCACTTAAGGCTCAGAGATCATTGTAAAAGAAGAA
GCAGAAGGATTATGTGACTAGGAGGAGCAGAAAGTGAGATTGTATTCTAG
AAGTGTTAGAGAAATTACATCCATGAAGTTTCATCAATAGGGCTATCTAA
TATGGTCTTAACAAGATAACAACAGATACGCTGGTGTAGATGAGGCGAAG
CTCGGAATGCCTCAACTGTTATTATTTTACCACAAGCAACTAAGGGATGC
TGAAGTTGTATTTAGTTTTCCCAGGGAAGAGAATACCAATTGGTTATTCA
AGACCAAATAGTCTACCATAGCATATAAATAACTCGCTCAATCCATATAA
GGCTGCTTTATATTTTGTGTTGTATTCATGTGCGTGAGTGCCTGTACATG
TGCGTATGTGCGTTTGTGTTTGCGCTTGCCTCTCCCCCTTTCTCCTTTTC
TCCCCCCTTTCCTCCTTTTTTCCCCCTTTTTTTTCCCCCCCTTTTCTACT
TTCCTTTTTCCTTCTCTTTCTTCCCTTTTTCCCCCCTCCCCCCCTCTCTT
ATTCCGCCTTTTTCTCTCTTTTTTTTCTTCCTCCCGCTCCTTTCTTTCCG
GCCCTTTCCTTGTTCTCCCCCGCCTTCTCTCTTTTTTTCCCCTCCCCCCC
TCTTTTTTCACTTTTCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k08.b1 MSMg01no476_k08.b1 CHROMAT_FILE:
MSMg01no476_k08.b1 PHD_FILE: MSMg01no476_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:49 2005
         (192 letters)



>mm_chr4_13620319_13620910
          Length = 592

 Score =  348 bits (180), Expect = e-100
 Identities = 189/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagtaggctggctacaagtataaacagtgaattaggaatgaaagaccatcaatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagtaggctggctacaagtataaacagtgaattaggaatgaaagaccatcaatcata 260

                                                                       
Query: 61  tctccttcaaacaggctcctgccctgagagtatccattatatactagagccactttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tctccttcaaacaggctcctgccctgagagtatccattatatagtagagccactttaaaa 320

                                                                       
Query: 121 atttctatgcagttttcattggcaaaaacaagtaaattgtccataatctgtatgatcccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atttctatgcagttttcattggcaaaaacaagtaaattgtccataatctggatgatcccc 380

                       
Query: 181 atggaagttgca 192
            |||||||||||
Sbjct: 381 gtggaagttgca 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)