Query= MSMg01no476_l09.b1 MSMg01no476_l09.b1 CHROMAT_FILE:
MSMg01no476_l09.b1 PHD_FILE: MSMg01no476_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:54 2005
(273 letters)
>mm_chr4_58339398_58340070
Length = 673
Score = 472 bits (244), Expect = e-137
Identities = 259/264 (98%)
Strand = Plus / Minus
Query: 7 gaattctgtttttctgattgcttggcttctcatcttaccaggccctgctgtgaagtcagt 66
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattctgttcctctgtttgcttggcttctcatcttaccaggccctgctgtgaagtcagt 411
Query: 67 gctgtgtactgtgggatctcagctatcatttctatggcaatagactcctgttgtggtaaa 126
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gctgtggactgtgggatctcagctatcatttctatggcaatagactcctgttgtggtaaa 351
Query: 127 caggggattagggggtttctgcagaaccaaggcctaccaccaacaaagatctggagctct 186
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 350 caggggattagggggtttctgcagaaccagggcctaccaccaacaaagatctggagctct 291
Query: 187 catttttaacccccagaggcagctcagagggtagagaagaacaaagcattctgggaacag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 catttttaacccccagaggcagctcagagggtagagaagaacaaagcattctgggaacag 231
Query: 247 agtaaccaaggttgccctgggaaa 270
||||||||||||||||||||||||
Sbjct: 230 agtaaccaaggttgccctgggaaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_l09.g1 MSMg01no476_l09.g1 CHROMAT_FILE:
MSMg01no476_l09.g1 PHD_FILE: MSMg01no476_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:54 2005
(262 letters)
>mm_chr4_58182801_58183462
Length = 662
Score = 468 bits (242), Expect = e-136
Identities = 257/262 (98%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 1 cttgcacacattccttacaccttataaatccatcactaagtaccgctgggggtccttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgcacacattccttacaccttataaatccatcactaagtaccgctgggggtccttttg 260
Query: 61 gggggtaagaggagggaacagctaagctctgttcagaggacaagatttccaaatgttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggtaagaggagggaacagctaagctctgttcagaggacaagatttccaaatgttttt 320
Query: 121 gttttcaagcaagaatttctggaattcttgatcctctctttccaaaggaatggtataata 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gttttcaagcaagaatttctagaattcttgatcctctctttccaaaggaatggcataata 380
Query: 181 tttatacagaaggaaactctctctctctctctctctctctctctctctctctctctctct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatacagaaggaagctctctctctctctctctctctctctctctctctctctctctct 440
Query: 241 ct-t-gtgtgtgtgtgtgtgtg 260
|| | |||||||||||||||||
Sbjct: 441 ctctcgtgtgtgtgtgtgtgtg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
