Query= MSMg01no476_m11.b1 MSMg01no476_m11.b1 CHROMAT_FILE:
MSMg01no476_m11.b1 PHD_FILE: MSMg01no476_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:00 2005
(245 letters)
>mm_chr4_126940572_126941216
Length = 645
Score = 435 bits (225), Expect = e-126
Identities = 237/241 (98%)
Strand = Plus / Minus
Query: 1 cagctcctctgccttcagccaacccccgcccaagtccagtcagagcaaaaggacctattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 cagctcctctgccttcagccaacccccgcccaagtccagtcagagcaaaacgacctattt 382
Query: 61 ttaaagattctcacaacctcagccttcctcagtttcaccagccacaccccgtctttccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagattctcacaacctcagccttcctcagtttcaccagccacaccccgtctttccag 322
Query: 121 gatctcagggcttttactgctgggaaaggcttctcaggactcctcgagtacctccgtgtc 180
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 321 gatctcggggcttttactgctgggaaaggcgtctcaggactcctcgagtacctccgtggc 262
Query: 181 cctctaaacacatttcctggtcggagctggtcactctgctctgaacgataaccttcctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctaaacacatttcctggtcggagctggtcactctgctctgaacgataaccttcctgg 202
Query: 241 g 241
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_m11.g1 MSMg01no476_m11.g1 CHROMAT_FILE:
MSMg01no476_m11.g1 PHD_FILE: MSMg01no476_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:00 2005
(506 letters)
>mm_chr4_126911485_126912388
Length = 904
Score = 907 bits (469), Expect = 0.0
Identities = 496/511 (97%), Gaps = 12/511 (2%)
Strand = Plus / Plus
Query: 1 agaggaggcagttcaagcaagaacgagtctgaggaagaaatgggagggttggcatggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggaggcagttcaagcaagaacgagtctgaggaagaaatgggagggttggcatggaag 260
Query: 61 atagccctgtcacaaacagtataccccttccctatgagtccactctgaagggagccatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagccctgtcacaaacagtataccccttccctatgagtccactctgaagggagccatag 320
Query: 121 gcttcccacagaatccctaaccagagatgaatcaaaatttttaacaaaccaaggaggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcccacagaatccctaaccagagatgaatcaaaatttttaacaaaccaaggaggcat 380
Query: 181 gtactgattagtgacagaatacagccagtgactgaccattgagctgatgttctggccagg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtactgattagtgacagaatacggccagtgactgaccattgagctgatgttctggccagg 440
Query: 241 gctgtttttt-----ctagacagggaacacaggtgggaggccttcctcctacagaaggat 295
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctg------gagggctagacagggaacacaggtgggaggccttcctcctacagaaggat 494
Query: 296 cggcacttggtaaatgcaggctgtgtaatggaaggagcttcactgaggatgaaagttctc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cggcacttggtaaatgcaggctgtgtaatggaaggagcttcactgaggatgaaagttctc 554
Query: 356 gaggtggctggataggagctgttgtcggcaagtttgagtataggatgggaagggggctgg 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 gaggtggctggataggagctgttgtaggcaagtttgagtataggatgggaagggggctgg 614
Query: 416 aggagatgagccagtacactagtcaggaagtgagcatctcaacttcctggggagttagga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aggagatgagccagtacactagtcaggaagtgagcatctcaacttcctggggagttagga 674
Query: 476 aagagagatctcacccccagtccccagcccc 506
|||||||||||||||||| | ||||||||||
Sbjct: 675 aagagagatctcaccccc-gcccccagcccc 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 904
Length adjustment: 10
Effective length of query: 496
Effective length of database: 894
Effective search space: 443424
Effective search space used: 443424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
