NNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATC
CGCGGAATTCATTCACTTAATCTTGGTGCTTTTGTTGCCTTGATGTAGAC
AATCTCAGTGTACTTTGATGGTAATATATTTTGTCAAGATACATTCCTGA
AATGTTTTTCCCTTGAAAGTTTGCCTGAAGAAACACAGCTCTCGAGATTC
AAATGAATTAATGCTCTGCTGAGGTATGCATAAGCACGTGTTCCTACTGC
TGTGTGCTGTGAGACTTAAGATGGGGCTAGCATGCACCACGCAGGGCGTT
GTGTTAGTCAGAGTCCAGGCTGCCTGAACATCCTCCACTGTGCCTATTAT
CTTTGAATACTTTGAACCCCATATGTACGCAAGCTCAAGACAAAAACTTA
GTGAACTTTTAAATACCATTAAACATTCTGAACACTCTGCATTAAATATG
TATCATTCCTTCCCAAGAGATGAACTTGTAAAATGAAAAGACAGGTAAGC
AGAGTTCCTTTGGAGACGCTGTGCTTTCTCAGAGTAAAAACTTTGTCGGA
GCGCTGTGTGCCATGGCCTTATCACCGTCATCATCATGATGGCCTGGCAG
AGTCTTCTTCTCCCAGGACTCGCGCTCAGCACAGTTCCGTGTCACCATCA
CATTAGAGTGACACTGTAGAAGGGACGGAGCTCCTCATGTTCTGAGAAGG
ATGTGGAAACACCAAATGGT

AAAAAGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATACCCAAATAAACC
AATTTTAAAAATGGAGTACAAAGCTAAACAGAGAATTCATAACAGAAGAA
TCTAAAATGGCTAAGAAACACTTAAAGAAATGTCCAAGTCCTTAGTCATC
AGAGAAATGTAAATTTAAATGACCCTGCACCACAATCAGAATGGCTAAGA
GCAAAAACTCAGGTGACATCGAGGATGTGGAGAAAGAGGAACACTCCTCT
ATTGCTTTGGGGATTGCAAACTGGTACAACCACTCTGAAAATTCATCTGG
CAATTCCTCAGAAAAGTGGAAATAGTTCTACTTGAAGACCCAGCTATACC
ACTACTGGGCATATTTTCAAAAGATGCTCCAACATACAACAAGAACGTGT
GTTCCACCATGCTCTTAGCAGTCTTATTTGTAATACCCAGAAGCGTCAAA
CAACCTTCAACAGAAGAGTAGATACAAAAAAATGTGATTCATTAACATAG
TGAAACATTATTCAGGTATTAAAAACAAGGATATCATGAATTTTGCAGGC
AAATTAATAAAACTAGAAAATATCATCCTTAGTGATGTAACCCAAACCCA
GAAGGACATGCATGGTGTGAACTAATTGATTAGTGATTGGAATACCTAGG
ATCCAACACACAGACGACAAAAAGTGAAACAAGCAGAAAGGCCC

Query= MSMg01no477_f03.b1 MSMg01no477_f03.b1 CHROMAT_FILE:
MSMg01no477_f03.b1 PHD_FILE: MSMg01no477_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:43 2005
         (673 letters)



>mm_chr4_81042409_81043481
          Length = 1073

 Score =  965 bits (499), Expect = 0.0
 Identities = 526/535 (98%), Gaps = 2/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcattcacttaatcttggtgcttttgttgccttgatgtagacaatctcagtgtact 67
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 gaattcattcacttaatcttggtgcttttgttgccttgatgtagacaatctcagcgtact 682

                                                                       
Query: 68  ttgatggtaatatattttgtcaagatacattcctgaaatgtttttcccttgaaagtttgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatggtaatatattttgtcaagatacattcctgaaatgtttttcccttgaaagtttgc 622

                                                                       
Query: 128 ctgaagaaacacagctctcgagattcaaatgaattaatgctctgctgaggtatgcataag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaagaaacacagctctcgagattcaaatgaattaatgctctgctgaggtatgcataag 562

                                                                       
Query: 188 cacgtgttcct-actgctgtgtgctgtgagacttaagatggggctagcatgcaccacgca 246
           |||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 561 cacgtgtt-ctgactgctgtgtgctgtgagacttaagatgggactagcatgcaccacaca 503

                                                                       
Query: 247 gggcgttgtgttagtcagagtccaggctgcctgaacatcctccactgtgcctattatctt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gggcgttgtgttagtcagagtccaggctgcctgaacatcctccactgtgcctattatctt 443

                                                                       
Query: 307 tgaatactttgaaccccatatgtacgcaagctcaagacaaaaacttagtgaacttttaaa 366
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 tgaatactttgaaccccatatgtacgcaagctcaagacgaaaacttagtgaacttttaaa 383

                                                                       
Query: 367 taccattaaacattctgaacactctgcattaaatatgtatcattccttcccaagagatga 426
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taccattaaacattctgaacgctctgcattaaatatgtatcattccttcccaagagatga 323

                                                                       
Query: 427 acttgtaaaatgaaaagacaggtaagcagagttcctttggagacgctgtgctttctcaga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 acttgtaaaatgaaaagacaggtaagcagagttcctttggagacgctgtgctttctcagt 263

                                                                  
Query: 487 gtaaaaactttgtcggagcgctgtgtgccatggccttatcaccgtcatcatcatg 541
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtagaaactttgtcggagcgctgtgtgccatggccttatcaccgtcatcatcatg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)