BAC Information

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BAC

Clone NameMSMg01-477F14
Chromosome4 (Build37)
Map Location 44,589,979 - 44,590,659
singlet/doubletsinglet
Overlap genePax5
Upstream geneGba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477F14.T7 (MSMg01no477_f14.b1)MSMg01-477F14.TJ (MSMg01no477_f14.g1)
ACCAG558721AG558722
length7321,267
length of high quality
(start - end)		682 (44 - 725)---
definitionCHROMAT_FILE: MSMg01no477_f14.b1 PHD_FILE: MSMg01no477_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:46 2005CHROMAT_FILE: MSMg01no477_f14.g1 PHD_FILE: MSMg01no477_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAG
CTTTGTTCAAAAACAAACATGAAGAGTGCCATTGCTTCCCTAAAGGACCC
TGATTTTCCAATCAGAGAAATAGACTCAGGTGATTTTACTAAGTAATGGA
GGTAAGATTTGAACTCAGGCCCACATGTCTCCAAAACTTGACCCTCCCCC
CTGCCATATTCCAAGGTCTAGATTTGGCTGTAGAGGTAACTGGGGAGGCT
CTGTGAAAGGAAAGGTTATGGGGGTTTCCTGGTTCTTCAAGTCTGGTCCT
CAAAGAGCTGACCCAGCATCTCCTCCCTGGAGGTAAGGCTGCCCTCTGGC
GGCCATGCTCCTCTGGTCAGATTTGGCTTGCCTTTGGCCAACCCTGCTTT
CTTCCCTAGCTGCATCTCAGAATGGCACATCTTCCCTTCACTTGTTCATC
CAAATTCACGCACACATACCATTGTCCCTCCTAGACTTTCTTTATGCCTT
TTGGAATCGAACCTTGGACTTCCTGGGTTTGTCGGCTGTTGGTACATGAG
CAGTCTCCATTTTCTGGCTATCACAAACAGTGCTACTCTGAACACTCACA
TACAGGTTTGCCCAGGGACTGTTGGTCCCAGTTTTCTTGCTTGCACAACC
CAGAAATTGCTGGGTCATGCGGGAACTCTATGTGCAACCTTCTGCAGGAT
GACCAGACTTTCCAAGTCCACACACCATTCTG

GCACAGTCTCGTTATGGCGCGAGCGGCCGGCNAGGAACGAGGGTTATTCA
CANCAATATACGTGGAGGCGGACCAGCTCGAGGCATATTCTCCTCAAAAA
AACACGGGAAGGAGGAAACCGGGGCAGAATGGGAGAGAAGGCATAATCCT
GCCGATCATTACACGATATTGTAATAATATCATCGTCTGCTTGTCCACGT
ACTAACCACATACACCATGAATGAGTGATAATCGCCGTCCAATATGCGCC
GATCGGCGACGTGCCGGCTGTAAGATAGTACAGAGGCAGTATACGAACAG
CTGAGCGGAGTATACATACGCTAAGAGGGCCGTAGGTCGTGATATGCGCT
GTCCCATGAGCAATATACATATAACACAGGAATACATACTATAAAATAAA
TGACAATAGAGACTTATTATACAAACATCCAGCATGAATCGCTAAGCGTG
NCGCGTGTTATGTACCGGAGCGCGATTCCGCATATCTTGAATGCCACGAC
CGCCCGGTCGCGGCGCGTGCTATATAAAACATACGATCGAAATCTCCGCG
CCACACCCCTGACGCACGCCCATATTCGTTCGCCTTTCTTATCAATCGTG
TGGTGAGGTGCGCCGACAGAACCGTAGTTGTTATATATATACCACTACCG
GATTATTATAAAATTGTGAGAATATATAATTAAAGCTGCATATTTTCTGT
TTTAGCGCACGGGCTCTTTATATTATAATTCGCGTTTCTCGTACCCGCAC
CGTGTATTCGCCACGACCACTCATGTAAATCAATATCTTGATTGTTATCT
ACCCTCACACTATTTCGGCGGGCCGCCGTCTGTATATGTGTTTATAAACA
TGACCCTCACATAACAACAAGCCACAGATTCGCGCTCAATAATATATACT
AGCCACCACATCACTCACATTAGATCCTCGCCAAGTATACACCACCGAGG
AGGCGACTGATGTGTTGGTGATCATAATTATACAGCTCTCGTAAGAAACC
ATAAACGAGCCGACGTCGCGACAATCTATGTACCCTGCCGAGCTCCGCCT
CTACACCCCGTCGATATGTCATTATGTATCATCCACGTGTATCCNCAACC
AGCACCAAAGATATATATATTCTTANATAGACGTCGCGTGTGAGTGCGCG
GTTATGTACGTATATCTATACATGTGTATGTTACCGCTACGCTATATATG
CNCTAGTATTNGCGCGGACGCTTCGCGTCTAGCGCGTCGGCATATCATGA
GCGGACGAGATGTAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_f14.b1 MSMg01no477_f14.b1 CHROMAT_FILE:
MSMg01no477_f14.b1 PHD_FILE: MSMg01no477_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:46 2005
         (682 letters)



>mm_chr4_44589813_44590894
          Length = 1082

 Score = 1278 bits (661), Expect = 0.0
 Identities = 677/685 (98%), Gaps = 7/685 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccagctttgttcaaaaacaaacatgaagagtgccattgcttccctaaaggaccctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ttcccagctttgttcaaaaacaaacatgaagagtgccattgcttccctaaaggaccctga 788

                                                                       
Query: 61  ttttccaatcagagaaatagactcaggtgattttactaagtaatggaggtaagatttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttttccaatcagagaaatagactcaggtgattttactaagtaatggaggtaagatttgaa 728

                                                                       
Query: 121 ctcaggcccacatgtctccaaaacttgaccct--cccccctgccatattccaaggtctag 178
           ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||
Sbjct: 727 ctcaggcccacatgtctccaaaacttgaccctcccccccccgccatattccaaggtctag 668

                                                                       
Query: 179 atttggctgtagaggtaactggggaggctctgtgaaaggaaaggttatgggggtttcctg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atttggctgtagaggtaactggggaggctctgtgaaaggaaaggttatgggggtttcctg 608

                                                                       
Query: 239 gttcttcaagtctggtcctcaaagagctgacccagcatctcctccctggaggtaaggctg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gttcttcaagtctggtcctcaaagagctgacccagcatctcctccctggaggtaaggctg 548

                                                                       
Query: 299 ccctctggcggccatgctcctctggtcagatttggcttgcctttggccaaccctgctttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccctctggcggccatgctcctctggtcagatttggcttgcctttggccaaccctgctttc 488

                                                                       
Query: 359 ttccctagctgcatctcagaatggcacatcttcccttcacttgttcatccaaattcacgc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttccctagctgcatctcagaatggcacatcttcccttcacttgttcatccaaattcacgc 428

                                                                       
Query: 419 acacataccattgtccctcctagactttctttatgccttttggaatcgaaccttggactt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acacataccattgtccctcctagactttctttatgccttttggaatcgaaccttggactt 368

                                                                       
Query: 479 cctgggtttgtcggctgttggtacatgagcagtctccattttctggctatcacaaacagt 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 367 cctgggtttgtcggctgttggtacatgagcagtctccattttctggctatc----acagt 312

                                                                       
Query: 539 gctactctgaacactcacatacaggtttgcccagggactgttggtcccagttttcttgct 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gctactctgaacactcacatacaggtttgcccagggactgttggtcccagttttcttgct 252

                                                                       
Query: 599 tgcacaacccagaaattgctgggtcatgcgggaactctatgtgcaaccttctgcaggatg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgcacaacccagaaattgctgggtcatgcgggaactctatgtgcaaccttctgcaggatg 192

                                    
Query: 659 accagactttcc-aagtccacacac 682
           |||||||||||| ||||||||||||
Sbjct: 191 accagactttccaaagtccacacac 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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