GGGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTAGGTTAATGGGGGAAATGTACTCATAAGCTCTGTGTTT
GATTAAAGATCTGACACTATGGATCACGTTAATATCTAAATCAGTGGTTG
TATGTGCCCATGCTGTTGAAATGGAGTTGAGATAATATTCATGAGGCTCC
TGAGCTTATAGATGAAACTCAATGAGGAGCCTTTAGTGAGAGTTCGCTCT
GTGGTGAAATCTTGCTGCATGAGGTCTGCCTTAATCGACACAAACATCTT
GCTAACAAGGAAACTGAGTCTTCAACAGGCCAAACACAATTCTGTATGTG
GCACATCTAAAATCTGTGTAACATCACGCCAAACCCAATGTTAGCCAACT
CTCTTTTAAATCCCTATATTGTGACAATCAGGCTGATTCTTTTTGAGAGC
ATAAGGACAGCATGACCATTGCGCTTGCCCTGTGGAACTGGGCACTTGGA
ATTTATAGTTGCTCATTCAGCTACTAGAAGAGAATCAATGACATGCCAGG
CTCTAGACTCCATGGTTTGATAGTCCTAACTTCAGAAACAAAATTGAGAA
CATGGGACATGCCATCTAGCATGAAATCTGAATCATGAAATAGGATATAA
AGCATGAGAAAATTAAATTGTGTTGACACTGCGTGTACAGTATAAAGGAA
AAAAAAAGGAGGAAGGAAACACATTTTCTAGAGAAGGTGAGC

TTTCTTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGA
AATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGG
AAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACA
ACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACANNCATCCANA
NANNNNNNNNNNNNNNNGGGGNNGNNNNGNGGGGGGGGNGNNNGGGGTGG
GGGGGGGGGGGGGGGGGNNGNNGGGGGNNGGGGTGTTGGTTNNTTTGTTT
GTTGGTTTTGTTGCCGTGGTCGTCCTTCGCTTTTTTTTTTTTTTTCCTCG
TTCTTTTCCCGCCCTTTCCCCTTTTTTCTTGTTGTTCCGTTTTGCTACCG
CTTCCTCCGTTCCCTCTCGTCTCTTTTTTTTTCCTCTTCCACTCCCTTGT
TTCTCTTTGTCTGTTTTCGCTTTTCTCTTCGTTTTTTATTGTACTTTTGC
GCTTTCTCTCTTTTTTTTTTGTCTACCTGTTTTGTTTTGGTTTTCATTAC
GCATTGCCTTTTTTTTTTCCTTCTATTTCTCCCCGCTTTATGCCCCCCAT
CCATATTTTCTTACTACCTACCACCTATCAGCAATTTTTTTTTTAAACGT
TTTTCATAACCACACAGATCGTATTTTTACTTTATGTTTACCCGTTCAAC
CCCTTCTCTACTTTTTTGTACATATTATATGGTAGCATTTATTCTTTTCG
TCGCCTCTTTTT

Query= MSMg01no477_k03.b1 MSMg01no477_k03.b1 CHROMAT_FILE:
MSMg01no477_k03.b1 PHD_FILE: MSMg01no477_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:07 2005
         (682 letters)



>mm_chr4_96822072_96823153
          Length = 1082

 Score = 1158 bits (599), Expect = 0.0
 Identities = 637/657 (96%), Gaps = 12/657 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaggttaatgggggaaatgtactcataagctctgtgtttgattaaagatctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattcactaggttaatgggggaaatgtactcataagctctgtgtttgattaaagatctg 600

                                                                       
Query: 65  acactatggatcacgttaatatctaaatcagtggttgtatgtgcccatgctgttgaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acactatggatcacgttaatatctaaatcagtggttgtatgtgcccatgctgttgaaatg 540

                                                                       
Query: 125 gagttgagataatattcatgaggctcctgagcttatagatgaaactcaatgaggagcctt 184
           ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 539 gagttgagatagtattcatgaggctcctgagcttgcagatgaaactcaatgaggagcctt 480

                                                                       
Query: 185 tagtgagagttcgctctgtggtgaaatcttgctgcatgaggtctgccttaatcgacacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tagtgagagttcgctctgtggtgaaatcttgctgcatgaggtctgccttaatcgacacaa 420

                                                                       
Query: 245 acatcttgctaacaaggaaactgagtcttcaacaggccaaacacaattctgtatgtggca 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 419 acatcttgctaacaaggaaactgagacttcaacaggccaaacacaattctgaatgtggca 360

                                                                       
Query: 305 catctaaaatctgtgtaacatcacgccaaacccaatgttagccaactctcttttaaatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catctaaaatctgtgtaacatcacgccaaacccaatgttagccaactctcttttaaatcc 300

                                                                       
Query: 365 ctatattgtgacaatcaggctgattctttttgagagcataaggacagcatgaccattgcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 299 ctatattgtgacaatcaggctgattctttttgagagcataaggacagcatgaccattgta 240

                                                                       
Query: 425 cttgccctgtggaactgggcacttggaatttatag------------ttgctcattcagc 472
           |||||||||||||||||||||||||||||||||||            |||||||||||||
Sbjct: 239 cttgccctgtggaactgggcacttggaatttataggctttgactgtattgctcattcagc 180

                                                                       
Query: 473 tactagaagagaatcaatgacatgccaggctctagactccatggtttgatagtcctaact 532
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 179 tactagaagagaatcaatgacatgccaggctctagactccatggtttgattgtcctaact 120

                                                                       
Query: 533 tcagaaacaaaattgagaacatgggacatgccatctagcatgaaatctgaatcatgaaat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tcagaaacaaaattgagaacatgggacatgccatctagcatgaaatctgaatcatgaaat 60

                                                                    
Query: 593 aggatataaagcatgagaaaattaaattgtgttgacactgcgtgtacagtataaagg 649
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  aggatataaagcatgagaaaattaaattgtgttgacactgcgtgtacagtataaagg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)