Query= MSMg01no477_k15.b1 MSMg01no477_k15.b1 CHROMAT_FILE:
MSMg01no477_k15.b1 PHD_FILE: MSMg01no477_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:10 2005
(524 letters)
>mm_chr4_16658584_16659507
Length = 924
Score = 982 bits (508), Expect = 0.0
Identities = 520/524 (99%)
Strand = Plus / Plus
Query: 1 gtgataagagcataggaaatataagtttactggagggcataaggtactattaaagtgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgataagagcataggaaatataagtttactggagggcataaggtactattaaagtgaat 260
Query: 61 atttgtgtctgtcatctcttttcaattctatcactttgactatttttacataattataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgtgtctgtcatctcttttcaattctatcactttgactatttttacataattataaa 320
Query: 121 gtgttttataaaaattcttaaccatatttcatatataaaatattaaataggacattaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttttataaaaattcttaaccatatttcatatataaaatattaaataggacattaaat 380
Query: 181 aatcatttacattttatttcattactcttttttgatgactaagaatgttaaaagacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatttacattttatttcattactcttttttgatgactaagaatgttaaaagacagaa 440
Query: 241 tactttctgaatatgatgaatattggtgggtgagtggatagtaatatttaggtataagga 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tactttctgaacatgatgaatattggtgggtgagtggatagtaatatttaggtacaagga 500
Query: 301 tatttgttttgtgcatgtttttaggtattatgtcattgtttccatgattttgctcttact 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tatttgttttgtgcatgtttttaggtatcatgtcattgtttccatgattttgctcttact 560
Query: 361 aaaaattgttttaaaattcaagccctaatgagttactaaaaagtagatagtgggccctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaattgttttaaaattcaagccctaatgagttactaaaaagtagatagtgggccctat 620
Query: 421 aggaatttcaacccaggtaattgcaaggttattagttgctctccaaaaactgaaagttag 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 aggaatttcaacccaggtaattgcaaggttattagttgctctccaaaacctgaaagttag 680
Query: 481 gccatattgctgaaggcaatacttagacagctcaatgaacaaag 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatattgctgaaggcaatacttagacagctcaatgaacaaag 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_k15.g1 MSMg01no477_k15.g1 CHROMAT_FILE:
MSMg01no477_k15.g1 PHD_FILE: MSMg01no477_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:10 2005
(641 letters)
>mm_chr4_16868267_16869307
Length = 1041
Score = 992 bits (513), Expect = 0.0
Identities = 620/683 (90%), Gaps = 42/683 (6%)
Strand = Plus / Minus
Query: 1 aagaaaaaaatttagaaagcattaactatgccaaacattacttcagttgctctggctaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 aagaaaaaaatttagaaagcattaactatgccaaacattacttcagttactctggctaag 685
Query: 61 tgaagaagaaagcaaatgcaaattttttcttggaccatgactgggaatggaacataagat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaagaagaaagcaaatgcaaattctttcttggaccatgactgggaatggaacataagat 625
Query: 121 aaataagatcaggtataaaagagattcacacgagctaaaacctgaaattataaatggata 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 aaataagatcaggtataaaagagattcacaagagctaaaacctgaaattataaatggata 565
Query: 181 cagaaagagtagaggaggtgaaacaaatgtgaacaaacccccaaaatttcagacaaggtt 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 564 cagaaagagtagaggaggtgaaacaaatatgaacaaacccccaaaatttcagacaaggct 505
Query: 241 gaggaatatctggcagagcagtgatatgtaaatacactgcatatttgcataggaaagaac 300
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 gaggaagatctggcagagcagtgatatgtaaatatactgcatatttgcataggaaagaac 445
Query: 301 atttgcccagaggagtgggtatcaatgctttgatgtggaagaatatctcatacatgtgaa 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttgcccagaggagtgggtattaatgctttgatgtggaagaatatctcatacatgtgaa 385
Query: 361 aaatagagaagaggagaaaggtataggaggattcagaaagagaaaagcaaatgatacatt 420
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 aaatagagaagaggagaaagttataggaggattcagaaagagcaaagcaaatgatacatt 325
Query: 421 aaggaagtccagagggaaacagaatcttacaaagtttgcaaaagttgtggaaacaacttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggaagtccagagggaaacagaatcttacaaagtttgcaaaagttgtggaaacaacttt 265
Query: 481 agatattaacctgatgaatataacctttcagaaaaagggattaaacctgtaaagatgtat 540
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 264 agatcttaacctgatgaatataaactttcagaaaaagggattaaacctgtaaagatatat 205
Query: 541 atatg------------------------------------------gctatgtacttca 558
|||| |||||||||||||
Sbjct: 204 atatatatatatatatatatatatatatatatatatatatatatatagctatgtacttca 145
Query: 559 gtgtttaactggtgcccgatcagggagaataagattgtaagccaaagaagcaggaagcat 618
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 144 gtgtttaactggtgccaaatcagggagaataagattgtaagccaaagaaaaaggaaacat 85
Query: 619 agagtgatgaggtttgatactca 641
|||| ||||||||| ||||||||
Sbjct: 84 agagcgatgaggttggatactca 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
