Query= MSMg01no477_l22.b1 MSMg01no477_l22.b1 CHROMAT_FILE:
MSMg01no477_l22.b1 PHD_FILE: MSMg01no477_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:16 2005
(620 letters)
>mm_chr4_84071645_84072664
Length = 1020
Score = 1172 bits (606), Expect = 0.0
Identities = 615/618 (99%)
Strand = Plus / Minus
Query: 3 gaattcttgcagggtttgtactctccccattagtaaaagagataagttgaaatgtattaa 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcctgcagggtttgtactctccccattagtaaaagagataagttgaaatgtattaa 761
Query: 63 aatttcactgtacaactgggagtttttgttcacagtaaatgtgttaatgtttcttcattg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aatttcactgtacaactgggagtttttgttcacagtaaatgtgttaatgtttcttcattg 701
Query: 123 cttgactgtttgtgtttaaatttaggcagcgtgcccaacagggacaaaattataggataa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cttgactgtttgtgtttaaatttaggcagcgtgcccaacagggacaaaattataggataa 641
Query: 183 agcaatgtataaaggaaaatccttcagagagcaccaataaggctcttttcaaaaataagc 242
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 agcaatgtataaaggaaaatccttcagagaacaccaataaggctcttttcaaaaataagc 581
Query: 243 agttacacataacagtgcacagctgtagccatagagaaaagttttatctgtctatttcag 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agttacacataacagtgcacggctgtagccatagagaaaagttttatctgtctatttcag 521
Query: 303 aattattggaatttttccttcccttgtgtgaaagttaagaggactgtgcatatgtcgata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aattattggaatttttccttcccttgtgtgaaagttaagaggactgtgcatatgtcgata 461
Query: 363 ggtaatctacttggatgtgaaaacatctattattttattcagtgttactcttgaaaaaag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggtaatctacttggatgtgaaaacatctattattttattcagtgttactcttgaaaaaag 401
Query: 423 aaaaataagtgatttcttcttgtctttgtgatgaagggaggcaaatagcatttagtgaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaaaataagtgatttcttcttgtctttgtgatgaagggaggcaaatagcatttagtgaaa 341
Query: 483 gaggtactagatcacatttgctttcctagggcaggaattttttccaagctaggaatttta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaggtactagatcacatttgctttcctagggcaggaattttttccaagctaggaatttta 281
Query: 543 attagtgcctgttatattattggaacatttttccgtgcttttcattgtagccatgaactt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attagtgcctgttatattattggaacatttttccgtgcttttcattgtagccatgaactt 221
Query: 603 agtaaatgcaactattca 620
||||||||||||||||||
Sbjct: 220 agtaaatgcaactattca 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_l22.g1 MSMg01no477_l22.g1 CHROMAT_FILE:
MSMg01no477_l22.g1 PHD_FILE: MSMg01no477_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:16 2005
(560 letters)
>mm_chr4_83899812_83900771
Length = 960
Score = 851 bits (440), Expect = 0.0
Identities = 518/560 (92%), Gaps = 27/560 (4%)
Strand = Plus / Plus
Query: 1 ttgtcataggaatctcggagaaagtgggagtgagaaatggaagctacccccagtctttat 60
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 228 ttgtcataggaatctcagcgaaagtgggagtgagaaatggaagcaacccccagtctttat 287
Query: 61 ggctatcaagtattgaattctggatactgcctcatatcatgggacaacggctctgcgtct 120
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 288 ggctatcaagtattgaattctagatactgcctcatatcatgggacaatggctctgcgtct 347
Query: 121 tccagacatgcaggatccgggtcaagtggcaggccaatctggaacactgctgttcttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tccagacatgcaggatccgggtcaagtggcaggccaatctggaacactgctgttcttgaa 407
Query: 181 gcagaaggaaagctgacacacagttcatgctggctcatgatgtttctactgggaagttat 240
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 408 gcagaaggaaagctgacacacagttcatgttggctcttgatgcttctactgggaagttat 467
Query: 241 cagcatcttttctgatcatattccattggccaaagtaagaaacatggctaattttgctgt 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagcaccatttctgatcatattccattggccaaagtaagaaacatggctaattttgctgt 527
Query: 301 cagagaggcattgaagcataattcttcccctaggaacaataggtgttggggatgaaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagagaggcattgaagcataattcttcccctaggaacaataggtgttggggatgaaagca 587
Query: 361 tattcctgtatgcagaaccaccacggacaccccaccccaccacacacacacacacacaca 420
||||||||||||||||||||||||||||||||| |||||| |||||| | | | | |
Sbjct: 588 tattcctgtatgcagaaccaccacggacacccc-ccccac-acacaccccccccccc--- 642
Query: 421 cacacacacacacacacacacacacacacacacagagttatgaacctacaaagacaactc 480
||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ----------------------cacacacacacagagttatgaacctacaaagacaactc 680
Query: 481 ttgcaagaaacaggccacccaagactccccaacttggcctcttaggattgaaagccatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcaagaaacaggccacccaagactccccaacttggcctcttaggattgaaagccatct 740
Query: 541 cagtagacatgtgaatgtca 560
||||||||||||||||||||
Sbjct: 741 cagtagacatgtgaatgtca 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
