Query= MSMg01no477_n21.b1 MSMg01no477_n21.b1 CHROMAT_FILE:
MSMg01no477_n21.b1 PHD_FILE: MSMg01no477_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:26 2005
(675 letters)
>mm_chr4_92191700_92192774
Length = 1075
Score = 862 bits (446), Expect = 0.0
Identities = 467/474 (98%), Gaps = 1/474 (0%)
Strand = Plus / Minus
Query: 202 tctctctctctctctctctctctctctctctctctctctctcttttgtttgtttgtgttg 261
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1075 tctc-ctctctctctctctctctctctcactctctctctctcttttgtttgtttgtgttg 1017
Query: 262 ttttttgagacagggtttctctgtatagctctggcggtcctggaacttactttgtagacc 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1016 ttttttgagacagggtttctctgtatagctctggctgtcctggaacttactttgtagacc 957
Query: 322 aggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgttgggattaaagg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgttgggattaaagg 897
Query: 382 cgtgtgccaccatgcctggctcctttctcttaatagctgtaaaccctatcattttatatc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 cgtgtgccaccatgcctggctcctttctcttaatagctgtaaaccctatcattttatatc 837
Query: 442 cagaaaactgcattttgaaagacactaaaaaattaggttatgtcattctatatgtttgtt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cagaaaactgcattttgaaagacactaaaaaattaggttatgtcattctatatgtttgtt 777
Query: 502 atataaaaacatacacacattagttgtatgtttcaaattataatttgtataattggaagc 561
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atataaaaacatacacatattagttgtatgtttcaaattataatttgtataattggaagc 717
Query: 562 tataattactattattgttaattattccttaggttttgaatattttggcatatataaaat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tataattactattattgttaattattccttaggttttgaatattttggcatatataaaat 657
Query: 622 actaaaaccatttaaatggttattttgtagtacgctcactctgtaacttaataa 675
|||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 656 actaaaaccatttaaatggttactttgtagtaggctcactctataacttaataa 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_n21.g1 MSMg01no477_n21.g1 CHROMAT_FILE:
MSMg01no477_n21.g1 PHD_FILE: MSMg01no477_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:26 2005
(655 letters)
>mm_chr4_91994408_91995463
Length = 1056
Score = 1178 bits (609), Expect = 0.0
Identities = 642/653 (98%), Gaps = 3/653 (0%)
Strand = Plus / Plus
Query: 5 ttactacgtcatgtaaaatcaaagttacaaatgttgctgct-acctgtctccatgacata 63
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 ttactacgtcatgtaaaatcaaagttacaaatgttgctgcttacctgtctccatgacata 264
Query: 64 tcagttaggtatacagtcaagtatatctggaaaggcctctatatttttttttcactttgt 123
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 265 tcagttaggtatacagtcaagtatatctggaaaggcctctacatttttttt-cactttgt 323
Query: 124 tactgttcttaaaattcctaaatattgaaaaaggtcctcggtatttattttaactagagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactgttcttaaaattcctaaatattgaaaaaggtcctcggtatttattttaactagagt 383
Query: 184 tcagaacttagattgtcctttttttcactttatggtacacttattttattttcatcagaa 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagaacttagattgtccttttcttcactttatggtacacttattttattttcatcagaa 443
Query: 244 atttatttccacatatgcggtatgcactgactcccaaaggcaactttttcaaggtaatgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 atttatttccacatatgcggtatgcactgactcccaaaggcaactttttcaaggttatgg 503
Query: 304 ggtgttttctttcttggtgttttcattttgtcttttggggggtctgtctcatttttactg 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 ggtgttttctttcttggtgttttcattttgtcttttggggggcctgtctcatttttactg 563
Query: 364 caagcataaaatatttattgaaaatatggaaatatttaaactcatttaaaggaaatttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagcataaaatatttattgaaaatatggaaatatttaaactcatttaaaggaaatttcc 623
Query: 424 atgacctgtgttaggtctcagtcacaatattctcttaaaagaccatttctttattaacac 483
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 624 atgacctgtgttaggtctcagtcacaatattcttttaaaacaccatttctttattaacac 683
Query: 484 ttttaaaa-aatgacaagtgaactgtcaccattaaagaagctacagcaaaaatgggattt 542
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 ttttaaaataatgacaagtgaactgtcaccattaaaggagctacagcaaaaatgggattt 743
Query: 543 tcctgcaacaaagaaaattaaaaagcaaacaaacaaatggaaaattaatatgtaacctaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcctgcaacaaagaaaattaaaaagcaaacaaacaaatggaaaattaatatgtaacctaa 803
Query: 603 catgcattatcaccctttgacagaaatctcccaaatgagaaaaatcaacgtgg 655
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 catgcattatcaccctttgacagaaatctcccaaatgagaaaaatcaatgtgg 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space: 674670
Effective search space used: 674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
