BAC Information

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BAC

Clone NameMSMg01-477O10
Chromosome4 (Build37)
Map Location 96,636,221 - 96,636,691
singlet/doubletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477O10.T7 (MSMg01no477_o10.b1)MSMg01-477O10.TJ (MSMg01no477_o10.g1)
ACCAG559143AG559144
length723727
length of high quality
(start - end)
471 (183 - 653)404 (324 - 727)
definitionCHROMAT_FILE: MSMg01no477_o10.b1 PHD_FILE: MSMg01no477_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:28 2005CHROMAT_FILE: MSMg01no477_o10.g1 PHD_FILE: MSMg01no477_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACACCTATAATTGCGGCCGCTATACGACTCCTATATTGACNAGATCCG
CGGAATTCAATTGTTCTTTACCTCCCATTTCTCCATTATCCTCCCCAGTG
CTTTTTGGAAGCGGTTCTCCATCTCCCTGCTTGGGATCTATACCCATTAG
AGTATAGGAAAAATATTGGTGGAACAGTATAACTGAGTGTGCATATTAAG
GCTTGCTGAACATCATNGAAAAGGTACTCTTTCCTGTACATGACTGTAGG
CAGGTAGATGAAGAGGTAGCTATTGATACATATGCATATATATTTCATGA
TTGTATGTGATACTTACATGATCAGATATATTCATACATATAAATATGTA
AACATTTCCTGGTAAATGTGCTCATATGTGTAAATATAAATTTATGCTTT
AATGTGTGATAGTGTGCATGTGCCCAAATATATAGGTGTGTGTGTGTATT
ACTGGCTGTAGGACTGGGAGAAAAAATTTGTTTGTCTTTGTATAATGAGA
ATAAGACAACAAAGGGTTAAAGCAATCACTTTGCAAATGGCTTTCCAAAA
AAGCTGCACCCTAAATTAATTTTGGCTGGTAATCTATATCGGGTTAAATA
ACTCCTCATTATTCTGCAACACAGCTGAGGCATCTCCAAATGTTTATCTT
GTTTTGTAACCGGTACCTTCTGGTATATTCTAGTGCCAGCACTCCCAGCT
CCTGCTATATTTCATTCTCACTA
NNNNCCCAATGAAGTGGGAGGCCTGGNGGNCGCCCTTCAAAACAGTTTAG
GTGAACTATAGATTGCACCAAGGAGTTCTGCCTGTATTCTTCCCAGCAAG
TACCCATTCACTGTCATGGTGCTTTGCTCCGGTTTTGCCTTCAGACCTGC
TGAGTTTAACCAAGGCCATTTACATGGGCATGGGTGAAAAGCTATGTGTC
AGAGCATGAGTGACTCCTCAGCTGTAGCATCAATAAAGACATAGACTCCC
TTGCCGCTGATAGTTCCGAACTCCCATTCACTCCTATATGTTGTGCAGGG
CAGGACCTCATAATATTGTTCTTAATCTAAGAGTGAATATTTATTGGCTC
AATCTGTTTAGGCCCTATGTACTTTACTGCAGATGTAGTGTGTTCATAGT
TGTCTAGACCATGCCATGCCAAAAACAAACAAACAAACAAACAAAAAACA
AACAAACAAACAAAACCTGTTTTGAAGCCCTCTGCTTGTCATTGGGATCT
TTTATTTTTTTTAGTCCCATCAACTGCAATATCCTCTGAATCTTATAGGT
TACAGGTTTCCTTCTTATTGCAGAGCTCATCACTTGTTCTCAGCATCTTG
ACTAGTCATGAGTCTGTACCAAGCACTGTCCCTATTCTCAGTTTCTTTAT
CTCTACAGTAGAGATACTATTAATAATTACTGACTTTGAGAAAGTCATTA
GTGTCAAACTCATAAGGAGTTCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_o10.b1 MSMg01no477_o10.b1 CHROMAT_FILE:
MSMg01no477_o10.b1 PHD_FILE: MSMg01no477_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:28 2005
         (471 letters)



>mm_chr4_96636021_96636891
          Length = 871

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%), Gaps = 2/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagtgtgcatattaaggcttgctgaacatcatng-aaaaggtactctttcctgtacat 59
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 671 ctgagtgtgcatattaaggcttgctgaacatcat-gaaaaaggtactctttcctgtacat 613

                                                                       
Query: 60  gactgtaggcaggtagatgaagaggtagctattgatacatatgcatatatatttcatgat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gactgtaggcaggtagatgaagaggtagctattgatacatatgcatatatatttcatgat 553

                                                                       
Query: 120 tgtatgtgatacttacatgatcagatatattcatacatataaatatgtaaacatttcctg 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 tgtatgtgatacttacatgatcagatatattcatacatataaatatataaacatttcctg 493

                                                                       
Query: 180 gtaaatgtgctcatatgtgtaaatataaatttatgctttaatgtgtgatagtgtgcatgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtaaatgtgctcatatgtgtaaatataaatttatgctttaatgtgtgatagtgtgcatgt 433

                                                                       
Query: 240 gcccaaatatataggtgtgtgtgtgtattactggctgtaggactgggagaaaaaatttgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 gcccaaatatataggtgtgtgtgtgtattactggctgtaggactgggagaagaaatttgt 373

                                                                       
Query: 300 ttgtctttgtataatgagaataagacaacaaagggttaaagcaatcactttgcaaatggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtctttgtataatgagaataagacaacaaagggttaaagcaatcactttgcaaatggc 313

                                                                       
Query: 360 tttccaaaaaagctgcaccctaaattaattttggctggtaatctatatcgggttaaataa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttccaaaaaagctgcaccctaaattaattttggctggtaatctatatcgggttaaataa 253

                                                               
Query: 420 ctcctcattattctgcaacacagctgaggcatctccaaatgtttatcttgtt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctcctcattattctgcaacacagctgaggcatctccaaatgtttatcttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)