BAC Information

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BAC

Clone NameMSMg01-478G08
Chromosome4 (Build37)
Map Location 104,720,174 - 104,720,485
singlet/doubletsinglet
Overlap genePrkaa2
Upstream geneDab1, C8b, C8a, 1700024P16Rik
Downstream geneLOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478G08.T7 (MSMg01no478_g08.b1)MSMg01-478G08.TJ (MSMg01no478_g08.g1)
ACCAG559522AG559523
length725827
length of high quality
(start - end)
313 (329 - 641)118 (76 - 193)
definitionCHROMAT_FILE: MSMg01no478_g08.b1 PHD_FILE: MSMg01no478_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:07 2005CHROMAT_FILE: MSMg01no478_g08.g1 PHD_FILE: MSMg01no478_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCNAAACGACGCAAATTCCGGAGCGGGCGGNGGAANNCCGC
ATATCGGCACTGGGGAGATGGCTCCATGGNTAAGAGCACTTGCTCAGAGA
ACCCAGTTTCCATTCCCAGTACCTACTGGAGGGCTCCCAACTCCCAGGGA
ATCTGACACTATCTTCTGACCTCTCTGGGAATCAGACATACAAGACATAG
ATGCAGTCAAAAGACTCATACTTTTAAGATAAAAATTTTTTTTAAATAAG
TAATGTTTTAGAAAAGATACAAATTAAACATTGTCTATATGGTACTAGTA
AAGTTTTGTATTTAATTNCAAGNNNTGNTTAAAATGTGTGCTAAAGTGCA
AAATTTCTGTCACATAATCATTTTCTTTCTTGTAGTCATTCTGGGAGTGT
GAAGCACTATATATTATTTTTTTCTTTTAGTTTGTGCTTATCTACTTTGT
TTCCTTAAAGAAATAAGAGAGAAAGTGTGAATGTGATTGTTTGTTTGTTA
GCTGGTTTGTTTCTGAGACAGGGGCTTAGCACGTTACCCTGGATGGCTTG
GCGCTGTCTAGATCAGGCTTGCCTAAAACTCAGAGATCTGTCTGCTTCTG
CGTTCCAAATGCATGCACCATCTGCCTGGCCAGAAAGTATTATATATTTT
TTTTTCTTTCCATTTTTTATTAGGGATTTAGCTCATTTACATTTCCAATG
CTATACCAAAAGTCCCCCATACCCA
ATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTACTAGAGGAGGGCCTTCNTTCATAGATAGACCCATGTTCAGAAAGT
ACTGAAATGGGACAAAAGGAGGAAGAGAAGGAGGAAGACAAGGTGGGTAG
AGGGATGGAGGGAGGAGGCAGAGAGGGAGGGAAGAGGGAGAAGGTCTTAG
AGGCAACGTTCGTTTTCGTCGCCTTCTGCTTTTTGGTCTGTTTTTTTTTC
CCCATGTTTTTTTGTCCCTTTATTCTTTTTTTCTCTCTCCTCTACTCCCC
CGCCCCCTTTTCCTGTTTTTTCCCCCCCCCCCAGACCCCGGGGCCCAGCG
ATCTTTTTCCCCCCCTCTCTCCGCCGTTGATTTCGTTTTTTGCTTTCCTT
CCTTTTCTTCTCCCCCTCTCCTTTCTTTTCCTTTTCTCTATATGGTTTTC
CACTCCTTTCTCCTTTTTCTCTCCTGGTCTCTTTTGCTCTTTCCTCTCGT
TCCCTTTTATATTTTCCTCTTTTTTCGGCTCCCGCTTTTTTTTCTCCTCT
CCGCTTGCGCTCCCGGGTCTCTGTTCCTTTGTTCCTTCTCGACCCCTTTT
TTTTTCTCTCTCCTTTTTCCCTGCCCTCTACTTTCTTTATCTCCGCGCCC
CTTTCTTCTCTCTTTTTTTTTTCGCCTTTTCTTTTTTCTCCGTTTTGCTG
TGTTTCTGCTTCTCTTTTTTCTTTTCTTCTGCATGCTGCCTAGCGGTTGG
ATCTAGCTTACGATCCCTCTTTCTTCTCCATCCCCTTACTCCCCTTTTGT
CTCCTCCTGTTTCCCCGCCCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_g08.b1 MSMg01no478_g08.b1 CHROMAT_FILE:
MSMg01no478_g08.b1 PHD_FILE: MSMg01no478_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:07 2005
         (313 letters)



>mm_chr4_104720109_104720821
          Length = 713

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaatgtgtgctaaagtgcaaaatttctgtcacataatcattttctttcttgtagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttaaaatgtgtgctaaagtgcaaaatttctgtcacataatcattttctttcttgtagtca 318

                                                                       
Query: 61  ttctgggagtgtgaagcactatatattatttttttcttttagtttgtgcttatctacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttctgggagtgtgaagcactatatattatttttttcttttagtttgtgcttatctacttt 258

                                                                       
Query: 121 gtttccttaaagaaataagagagaaagtgtgaatgtgattgtttgtttgttagctggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtttccttaaagaaataagagagaaagtgtgaatgtgattgtttgtttgttagctggttt 198

                                                                       
Query: 181 gtttctgagacaggggcttagcacgttaccctggatggcttggcgctgtctagatcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtttctgagacaggggcttagcacgttaccctggatggcttggcgctgtctagatcaggc 138

                                                                       
Query: 241 ttgcctaaaactcagagatctgtctgcttctgcgttccaaatgcatgcaccatctgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttgcctaaaactcagagatctgtctgcttctgcgttccaaatgcatgcaccatctgcctg 78

                       
Query: 301 gccagaaagtat 312
           ||||||||||||
Sbjct: 77  gccagaaagtat 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)