Query= MSMg01no478_k07.b1 MSMg01no478_k07.b1 CHROMAT_FILE:
MSMg01no478_k07.b1 PHD_FILE: MSMg01no478_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:24 2005
(561 letters)
>mm_chr4_88641728_88642688
Length = 961
Score = 944 bits (488), Expect = 0.0
Identities = 542/560 (96%)
Strand = Plus / Minus
Query: 1 ctcttaggagaaaaaaatggcagtgactacaatgggtccgatttcagtcaatgaagtatg 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 760 ctcttaggagaaaaaaatggcagtgactacaatgggtttgatttcagtcaatgaagtatg 701
Query: 61 ttcctgtctattgcaacttgagttaataaggtatttcagataattgcctttacaagagat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttcccgtctattgcaacttgagttaataaggtatttcagataattgcctttacaagagat 641
Query: 121 acgcatgctaccttaaatacctaacagtacagatcaatttcctgaatgtagaccatctaa 180
||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 640 acgtatgttaccttaagtacctaacagtacagatcaatttcctgaaggtagaccatctaa 581
Query: 181 aactctttgtgttttttcctctttgttcctgatttccctcctttccttttcttattcctt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 580 aactctttgtgtgttttcctctttgttcctgatttccctcctttccttttcttatcccag 521
Query: 241 tagttactctttaaatacagattcaaactaaaatcttagcaaatattcccttttcttgaa 300
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 520 tagttactctttaaatacagattcaaactaaaatcagagcaaatgttcccttttcttgaa 461
Query: 301 tctaggttgatcctgaaagctttggcttccttcctcctggagccatgcattaccgaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctaggttgatcctgaaagctttggcttccttcctcctggagccatgcattaccgaggaa 401
Query: 361 gaattccaggctcccccagagaaaagctgcacagagacaccctggaagatgagaaagcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaattccaggctcccccagagaaaagctgcacagagacaccctggaagatgagaaagcag 341
Query: 421 atggagagaagcctgtggaggagcactcggggatcaaacctaacaggctacctggagctg 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atggagtgaagcctgtggaggagcactcggggatcaaacctaacaggctacctggagctg 281
Query: 481 aacttccccttgactatagccttagaagtcgcagaagagacacctacaaactatggcaag 540
||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 280 aacttccccttgactgtagcgtcagaagtcgcagaagagacacctacaaactatggcaag 221
Query: 541 ataaaataaactcattgctg 560
||||||||||||||||||||
Sbjct: 220 ataaaataaactcattgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_k07.g1 MSMg01no478_k07.g1 CHROMAT_FILE:
MSMg01no478_k07.g1 PHD_FILE: MSMg01no478_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:24 2005
(412 letters)
>mm_chr4_88325243_88326058
Length = 816
Score = 642 bits (332), Expect = 0.0
Identities = 394/416 (94%), Gaps = 4/416 (0%)
Strand = Plus / Minus
Query: 1 atttacagacacatggctcagcatatcagggactcttggccctcagaggttttgagtttt 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 616 atttacagacacatggctcagcatatcagggactcttgaccctcagagtttttgagtttt 557
Query: 61 gaaggacactggaacagatgaatgaaatgtgtatctgtgtgtaggactaccaaggatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaaggacactggaacagatgaatgaaatgtgtatctgtgtgtaggactaccaaggatatg 497
Query: 121 ctagaacttcatcaactcctcttaagactaatctgtcaattacagcaattcttccttgag 180
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct: 496 ctagaacttcatcaactcctcttaagactaatctgtcaattaaaacaattcatccttgag 437
Query: 181 ttttt---ccccctgactccatggtcaggagatagatgtttctgtctctttgggtgatga 237
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 436 tttttttcccccctgactctgtggtcaggagataaatgtttctgtctctttgggtgatga 377
Query: 238 acatgattatatgagagttgtcatgtctgattcctcagtgggagcagagacatagtttaa 297
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 376 gcatgcttatatgagtgttgtcatgtctgattcttcagtgggagcagagacatagtttaa 317
Query: 298 aagattatatgtaatagggacacatagtggtgatctgtgtatttgcagaaaatcaagtga 357
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 316 aacattatatgtaatagggacacatagtggtgatcagtgtatttgcagaaaatcaagtga 257
Query: 358 tatcaaggtgagctggagatctggtaattgaagcagattgtattggg-attgtaat 412
||||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||
Sbjct: 256 tatcaaggtgagctgcagatctggtaattgaagcacactgtgttggggattgtaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 816
Length adjustment: 9
Effective length of query: 403
Effective length of database: 807
Effective search space: 325221
Effective search space used: 325221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
