BAC Information

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BAC

Clone NameMSMg01-478L17
Chromosome4 (Build37)
Map Location 134,482,851 - 134,631,727
singlet/doubletdoublet
Overlap geneD4Wsu53e, Syf2
Upstream geneHmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a
Downstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478L17.T7 (MSMg01no478_l17.b1)MSMg01-478L17.TJ (MSMg01no478_l17.g1)
ACCAG559778AG559779
length731736
length of high quality
(start - end)		632 (63 - 694)669 (68 - 736)
definitionCHROMAT_FILE: MSMg01no478_l17.b1 PHD_FILE: MSMg01no478_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:31 2005CHROMAT_FILE: MSMg01no478_l17.g1 PHD_FILE: MSMg01no478_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,631,096 - 134,631,727)(134,482,851 - 134,483,519)
sequence
TGCGGCCGCTATACGACTCCTATTCCAACAGGGGCGCGGAATTCTTGTCT
TACTATACACCCAGTGGCCCTTTGCATGGTGGGGAGAAGTCGCTGCCTAT
CCATAAGACCTCTCTGCCAGAGGGTCAGCTTCCTCTCAGATCAGCACGTT
CGTCAAGCAGGGTCTCAGGGGCAGCAGAGCTGGCAGGTAGACCTGCCCTG
CACCTCTTTGTGGTCAGGCTCCAGGCTCCATGGTGTGTGCTGGGCTTTAA
GGGAGGGAGGGTGGGAAGGCCATTCTTGCTATCTTGTTCCTGTTTCAGTT
TATCTGTTCATGGAGCTGTCTTTAGGAAGCATGTGGGTACACCCCTGTCA
ACAGTCCCTGAGTGCTGGCACACCCCTTAGCTCCCTGTCCTAATCCTGAC
TCCTCTGGCCTCCATTCCTCTCCAGCTCCCCGCACTTGACCTCACCAGCC
TGGGCCGGGGTGCCGGGGCAGCGTAAGGTGATGCAGACTGGGGTCTGGAA
CTGGACAGCCAGTCTGGTGTCTTTGGTTGAACCTCACCTCCTCACTAGCC
ATAGTGAGAAGGAAGGAGACAGACTGGATTCCGTTTGCTGGAAGTACCCC
AGGCAGGTGGAAGACAGTCCAGCCCTGGCCTACAACCAAACACACTGTTT
TAATCCTCAAACTGTCCTTGCATGTCTCCCAGGACCTGGACCCAGNTCTG
CTCCCGGAGAATTCCTGGAAATAAAATGCCC

XXXXXXXXXXXXXXXXXXXXXXXXTTTCACAAAGGGXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCGTAGCAAAGCCACTGCAGAAAACAACTAAAGC
TGCTGTTGAAGAGAAGTCTTCAGGATCACCAAAAATAGATAAGAAAAAAA
GTCCTTACGGACTGTGGATACCTGTCTAAAGGAAAACTAAGGGCTGGGGT
TGCCAAAACTGCACTTTACTGAGGGGTTTGTGTCCAGCATTATATCGTCT
GCCTGAGTGATCACAGCAGTAAATGTGATTAAAATCCATTACAGAAAGAG
ACTTAATGGGGTTTTTCATGGTTGAGGTTTCTCTTGAAGATAGGAGGACA
CAGATGACCCAGAGAATTGCATACAGGTGGGAATTTTGTATATATCTGTA
AGTATTGTATAGAATTGCTTATATACAAAGGTGAATTTTTTAAAGACACA
GTTGTACACTGAATTTTGTATATTTGTTAATAAACTTTTTATTATTTGTC
TTGATTTTTATGGATGTTGAATGTGTCTGTCTACATCTGAAGAAGAAACC
TTCCTGAAAACAACACAGGGTTTATGAATTCATACTTTGACATTTGTGTG
TTGGATTAGGGAGGTTGGACATTGGTTTCTTTTTTCTTTAAATGTGTATC
CCCTCAGGGCTGGTATTGGAATATGCCCTAAGACTCCTCTTAATCATCTG
TAACTCCAATTCTAGGGGACCCAGCGTTCTGTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_l17.b1 MSMg01no478_l17.b1 CHROMAT_FILE:
MSMg01no478_l17.b1 PHD_FILE: MSMg01no478_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:31 2005
         (632 letters)



>mm_chr4_134630896_134631927
          Length = 1032

 Score = 1199 bits (620), Expect = 0.0
 Identities = 629/632 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggccctttgcatggtggggagaagtcgctgcctatccataagacctctctgccagag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 832 agtggccctttgcatggtggggagaagtcgctgcctatccagaagacctctctgccagag 773

                                                                       
Query: 61  ggtcagcttcctctcagatcagcacgttcgtcaagcagggtctcaggggcagcagagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ggtcagcttcctctcagatcagcacgttcgtcaagcagggtctcaggggcagcagagctg 713

                                                                       
Query: 121 gcaggtagacctgccctgcacctctttgtggtcaggctccaggctccatggtgtgtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcaggtagacctgccctgcacctctttgtggtcaggctccaggctccatggtgtgtgctg 653

                                                                       
Query: 181 ggctttaagggagggagggtgggaaggccattcttgctatcttgttcctgtttcagttta 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggctttaagggagggagggtaggaaggccattcttgctatcttgttcctgtttcagttta 593

                                                                       
Query: 241 tctgttcatggagctgtctttaggaagcatgtgggtacacccctgtcaacagtccctgag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctgtccatggagctgtctttaggaagcatgtgggtacacccctgtcaacagtccctgag 533

                                                                       
Query: 301 tgctggcacaccccttagctccctgtcctaatcctgactcctctggcctccattcctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgctggcacaccccttagctccctgtcctaatcctgactcctctggcctccattcctctc 473

                                                                       
Query: 361 cagctccccgcacttgacctcaccagcctgggccggggtgccggggcagcgtaaggtgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cagctccccgcacttgacctcaccagcctgggccggggtgccggggcagcgtaaggtgat 413

                                                                       
Query: 421 gcagactggggtctggaactggacagccagtctggtgtctttggttgaacctcacctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcagactggggtctggaactggacagccagtctggtgtctttggttgaacctcacctcct 353

                                                                       
Query: 481 cactagccatagtgagaaggaaggagacagactggattccgtttgctggaagtaccccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cactagccatagtgagaaggaaggagacagactggattccgtttgctggaagtaccccag 293

                                                                       
Query: 541 gcaggtggaagacagtccagccctggcctacaaccaaacacactgttttaatcctcaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcaggtggaagacagtccagccctggcctacaaccaaacacactgttttaatcctcaaac 233

                                           
Query: 601 tgtccttgcatgtctcccaggacctggaccca 632
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgtccttgcatgtctcccaggacctggaccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_l17.g1 MSMg01no478_l17.g1 CHROMAT_FILE:
MSMg01no478_l17.g1 PHD_FILE: MSMg01no478_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:31 2005
         (669 letters)



>mm_chr4_134482651_134483719
          Length = 1069

 Score = 1247 bits (645), Expect = 0.0
 Identities = 663/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtagcaaagccactgcagaaaacaactaaagctgctgttgaagagaagtcttcaggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtagcaaagccactgcagaaaacaactaaagctgctgttgaagagaagtcttcaggatc 260

                                                                       
Query: 61  accaaaaatagataagaaaaaaagtccttacggactgtggatacctgtctaaaggaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaaaatagataagaaaaaaagtccttacggactgtggatacctgtctaaaggaaaac 320

                                                                       
Query: 121 taagggctggggttgccaaaactgcactttactgaggggtttgtgtccagcattatatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taagggctggggttgccaaaactgcactttactgaggggtttgtgtccagcattagatcg 380

                                                                       
Query: 181 tctgcctgagtgatcacagcagtaaatgtgattaaaatccattacagaaagagacttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcctgagtgatcacagcagtaaatgtgattaaaatccattacagaaagagacttaat 440

                                                                       
Query: 241 ggggtttttcatggttgaggtttctcttgaagataggaggacacagatgacccagagaat 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggacgttcatggttgaggtttctcttgaagataggaggacacagatgacccagagaat 500

                                                                       
Query: 301 tgcatacaggtgggaattttgtatatatctgtaagtattgtatagaattgcttatataca 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatacaggtgggaatcttgtatatatctgtaagtattgtatagaattgcttatataca 560

                                                                       
Query: 361 aaggtgaattttttaaagacacagttgtacactgaattttgtatatttgttaataaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtgaattttttaaagacacagttgtacactgaattttgtatatttgttaataaactt 620

                                                                       
Query: 421 tttattatttgtcttgatttttatggatgttgaatgtgtctgtctacatctgaagaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttattatttgtcttgatttttatggatgttgaatgtgtctgtctacatctgaagaagaa 680

                                                                       
Query: 481 accttcctgaaaacaacacagggtttatgaattcatactttgacatttgtgtgttggatt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 accttcctgaaaacaacacagggtttatgaattcatactttgacatttgtgtgttgcatt 740

                                                                       
Query: 541 agggaggttggacattggtttcttttttctttaaatgtgtatcccctcagggctggtatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggaggttggacattggtttcttttttctttaaatgtgtatcccctcagggctggtatt 800

                                                                       
Query: 601 ggaatatgccctaagactcctcttaatcatctgtaactccaattctaggggacccagcgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaatatgccctaagactcctcttaatcatctgtaactccaattctaggggacccagcgt 860

                    
Query: 661 tctgttcca 669
           |||||||||
Sbjct: 861 tctgttcca 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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