Query= MSMg01no478_n01.b1 MSMg01no478_n01.b1 CHROMAT_FILE:
MSMg01no478_n01.b1 PHD_FILE: MSMg01no478_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:36 2005
(644 letters)
>mm_chr4_68599540_68600583
Length = 1044
Score = 1170 bits (605), Expect = 0.0
Identities = 632/641 (98%)
Strand = Plus / Plus
Query: 1 gtatccaaagatatctctcgctgtccttctttgtctgcaacttcattttacagcctaaag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatccaaagatatctctcactgtccttctttgtctgcaacttcattttacagcctaaag 260
Query: 61 atttaaaatatttactgctagaatacaattgctgtggaggcggagccagaagtttattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaaaatatttactgctagaatacaattgctgtggaggcggagccagaagtttattcc 320
Query: 121 taacatctagtgcaaactctgcatgcctgtataaaaagctcctaataaatattaagtcag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatctagcgcaaactctgcatgcctgtataaaaagctcctaataaatattaagtcag 380
Query: 181 ccggcctcactgatgtttctcttccctcttttccaatgccttcttccatagttcttcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccggcctcactgatgtttctcttccctcttttccaatgccttcttccatagttcttcatc 440
Query: 241 ctttttctcttctcctatgcatccactcacatcatctcttaacagtttaaaattttccat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttcctcttctcctatgcatccactcacatcatctcttaacagtttaaaattttccat 500
Query: 301 gtaaattgcttatgcaattctcttagaaatatgattatttctcctcttacactgataatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaattgcttatgcaattctcttagaaatatgattatttctcctcttacactgataatg 560
Query: 361 aaaatcaggctaaatatgattgattaaattcccttaaagtgatgaaaaaaaaaggtgaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatcaggctaaatatgattgattaaattcccttaaagtgatgaaaaaaaaaggtgaac 620
Query: 421 ctcatatggttgactccaacttcagagctttctaaatactcccactgtccttaaaaataa 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ctcatatggttgactccaacttcagagctttccaaatactcccactgtccttaaaaataa 680
Query: 481 taagcctatcaacttcccagaacataagacatgttgccactgttctctactcctcaatat 540
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 681 taaacctatcaacttcccagaacataagacatgttgccactgttctctatttctcaatat 740
Query: 541 aaccctaactacattttctcaatcaataacaattcccatcttattgcatctaatattggt 600
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 aaccctaactacagtttctcaatcaataacaattcccattttattgcatctaatattggt 800
Query: 601 cttccatactcaacagttcatttcattttctggcctttttt 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttccatactcaacagttcatttcattttctggcctttttt 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_n01.g1 MSMg01no478_n01.g1 CHROMAT_FILE:
MSMg01no478_n01.g1 PHD_FILE: MSMg01no478_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:37 2005
(639 letters)
>mm_chr4_68786915_68787953
Length = 1039
Score = 1178 bits (609), Expect = 0.0
Identities = 632/645 (97%), Gaps = 12/645 (1%)
Strand = Plus / Minus
Query: 1 attgttgtttcatgctatgttttaaatgcctagctttccatgcaagaaaacaaacaaaca 60
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 839 attgttgtttcatgc--tgttttaaatgcctagctttccatgcaaga----aaacaaaca 786
Query: 61 aacaaaactttctaacttaaggagtgagagggaattttgtagatgttctatggttcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aacaaaactttctaacttaaggagtgagagggaattttgtagatgttctatggttcttct 726
Query: 121 gaactcctgagtaaccctttatacaaaagtgaagagaaaaaaacaaacaacagcaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaactcctgagtaaccctttatacaaaagtgaagagaaaaaaacaaacaacagcaacaaa 666
Query: 181 atgaagtcattaattgggcttaaggtttattttcccactcttaaagttgagacagaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgaagtcattaattgggcttaaggtttattttcccactcttaaagttgagacagaagtt 606
Query: 241 agctttcaaactccatggattgtcagaaactaaattttctgtggtttaacaaattgtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agctttcaaactccatggattgtcagaaactaaattttctgtggtttaacaaattgtaat 546
Query: 301 ttcaagatcaatcaccttagaaaatcctgtaaaatactacctgaacacaaaatctcaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttcaagatcaatcaccttagaaaatcctgtaaaatactacctgaacacaaaatctcaaac 486
Query: 361 tatatccaagaacaacaacaa-aa-----aaaaatagaaatttgaacatttttacaaatc 414
||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 485 tatatccaagaacaacaacaacaacaacaaaaaatagaaatttgaacatttttacaaatc 426
Query: 415 tgttttaacagtacttcatgggattcatgctcatatttgagtttgaaaatgattgttcta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgttttaacagtacttcatgggattcatgctcatatttgagtttgaaaatgattgttcta 366
Query: 475 gaaaagacatctagtgcaagaaaaataatgtcacaatagaagtgaaagcagagaagcaga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaaaagacatctagtgcaagaaaaataatgtcacaatagaagtgaaagcagagaagcaga 306
Query: 535 ttaccatcacagccagtatcctaataagataccatgtccatgctatctaagggaactctg 594
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcccatcacagccagtatcctaataagataccatgtccatgctatctaagggaactctg 246
Query: 595 agagttgaaaacataatggttctagactgaagacttttgtctaaa 639
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agagttgaaaacataatggttctagactgaagacttttgtctaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
