Query= MSMg01no479_d02.b1 MSMg01no479_d02.b1 CHROMAT_FILE:
MSMg01no479_d02.b1 PHD_FILE: MSMg01no479_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:06 2005
(645 letters)
>mm_chr4_9444680_9445724
Length = 1045
Score = 1112 bits (575), Expect = 0.0
Identities = 620/635 (97%)
Strand = Plus / Plus
Query: 5 gaattcaaagaaatcaaagagtgactgtgctagagaagagactgtagaagtgactgtcac 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagaaagcaaagagtgactgtgctagagaagagactgtagaagtgactgtcac 264
Query: 65 aacagatcctagttagttctgccatactcgggatggatcaggatgttacagctccaaaca 124
|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 265 aacaaatcctagttagttctgccatactcggggtggatcaggatgttacagcttcaaaca 324
Query: 125 ctgtgggagcgtcttgtctcaccgctaccattaaacgaaacaaacccatggccgaccaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ctgtgggagcgtcttgtctcaccgctaccattaaacgaaacaaacccatggccaaccaac 384
Query: 185 tcaagatgcccttcacacgtgcttcctgactacagctgtgaatgagaatgtagttactgc 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaagatgcccttcacacgtgcttactgactacagctgtgaatgagaatgtagttactgc 444
Query: 245 tggagcatggctgtgaccacatactgaccactgatagacgtcaaggttgttgaggcatta 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggaccatggctgtgaccacatactgaccactgatagacgtcaaggttgttgaggcatta 504
Query: 305 gagaaaatccctctgaatttctttgtgcttcaagacgactctgaagggttgtctcacatt 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 gagaaaatccctctgaatttctttgtgcttcaagacgaccctgaagggttgtctcacatt 564
Query: 365 gctttacagacatgcttcaacatattaggatgccctcatgcactaaaactttcgtccatg 424
||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 565 gctttacggacatgcttcaacatattaggatgtcctcatgcactaaaacattcgtccatg 624
Query: 425 gtcactaaagttagtggcagagtgggacatgaaaacattcctaactgttacagatgcatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcactaaagttagtggcagagtgggacatgaaaacattcctaactgttacagatgcatg 684
Query: 485 gtgactataaagataactataagagcattacagggccattgccatcaccgtggaaaggac 544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgaccataaagataactataagagcattacagggccattgccatcaccgtggaaaggac 744
Query: 545 atctgtcatagtacagaccctattcagctatcactgcagaggacagagcattgctcccaa 604
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 745 atctgtcatagtacagaccctattcagctatcactgcagaggacacagcattgctcccga 804
Query: 605 ggctaccatactgaatgataaaggactgcctggca 639
|||||||||||||||||||||| ||||||||||||
Sbjct: 805 ggctaccatactgaatgataaatgactgcctggca 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_d02.g1 MSMg01no479_d02.g1 CHROMAT_FILE:
MSMg01no479_d02.g1 PHD_FILE: MSMg01no479_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:06 2005
(500 letters)
>mm_chr4_9634001_9634900
Length = 900
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%)
Strand = Plus / Minus
Query: 1 tctgctgtgagaaattcccagagggactctgtagtttcttgcatatccttccagaggaga 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tctgttgtgagaaattcccagagggactctgtagtttcttgcatatccttccagaggaga 641
Query: 61 gatcactgcttatgaagcagcctggatatgatttataaaggtcagaagacatacacgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gatcactgcttatgaagcagcctggatatgatttataaaggtcagaagacatacacgtaa 581
Query: 121 tgtacacatggttttattgagactcagtgaggtaatgactatggggcgtctatggattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgtacacatggttttattgagactcagtgaggtaatgactatggggcgtctatggattga 521
Query: 181 ggaaactaatatctgctgatagcaaaggtatggggaatattcatagaatccaattagaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 520 ggaaactaatatctgctgatagcaaaggtatggggaatattcatagaatctaattagaag 461
Query: 241 caggaaccaacactaagagattttataatgacattctgtccactgtaccagtttctgcgt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaggaaccaacactaagagattttataatgacattctgtccactgtaccagtttctgcgt 401
Query: 301 ggcacaagcaaattctagctgaagctaattttggacttgtaaacaaggacacctgtgcta 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggcacaagcaaattctagctgaggctaattttggacttgtaaacaaggacacctgtgcta 341
Query: 361 ccagctgcaaagctttatgctatagcttgactatgaaatactcccaacaggctcatagaa 420
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 340 ccagctgcaaagctttatgttatagcttgactatgaaatactcccaacaggttcatagag 281
Query: 421 tgtgagcttgattgctagataaaaggcttttgggacacgactgcctcctgagaaaactga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgtgagcttgattgctagataaaaggcttttgggacacgactgcctcctgagaaaactga 221
Query: 481 cctaattggtggagttgctt 500
||||||||||||||||||||
Sbjct: 220 cctaattggtggagttgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
