BAC Information

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BAC

Clone NameMSMg01-480A23
Chromosome4 (Build37)
Map Location 110,565,755 - 110,566,085
singlet/doubletsinglet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480A23.T7 (MSMg01no480_a23.b1)MSMg01-480A23.TJ (MSMg01no480_a23.g1)
ACCAG560791AG560792
length735725
length of high quality
(start - end)
639 (47 - 685)570 (77 - 646)
definitionCHROMAT_FILE: MSMg01no480_a23.b1 PHD_FILE: MSMg01no480_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:15 2005CHROMAT_FILE: MSMg01no480_a23.g1 PHD_FILE: MSMg01no480_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTCCCATTACCCTTATCACTCAGCTCATAACTGTCTATGAAT
ATAGTTCTAGGAGATCTGATGCTATACTCCTTCATCAGGCACCTGCACAC
AGGTGATAGATAGTCACACATGCATACTGTCTTAATTACTGTTCTATTGC
TGTGAAGAAACACCATGACCACACAAACTATTGAAACAAAACACTTATTT
TGGGGATTGCTTAGTTTCATAGGATTAGTCTATTATCTTGGTAGTGGGGG
AAGTAGGGTAGCATACAGGCAGGCTAGGCCCTGGGAAAGAGAGCTTTATA
TCCTGAACCTCAAGAAGCCATGAAAAAGAAAAGGCCTGTGCCTGAAATGA
GCTTCTGAAACCTCAAAGTCAGTGACACCTTTCCTCAAACAAGGCCACAC
CTACTCCAATAAAGTTGTGCAAGTCTCCTAATCTTTGTAAGCATTCAAAA
AAGAATGCCTATGGGGGGGCATTCTTATTCAAATCATCATACATAAATTA
AAAATATATTAAAACCCAGCCCGATTAANATATAGGCAAAAGACTTAAAC
AGATATTGCCCCAAAAGAAGATATATAATGGTTAATGAGATCATGAAAAG
ATGCTCAACATCTTATTAATCAGAGGATTGCAGATCAAAGCCATGATGAC
CTATCACTTCATACCCATTAGGATGGCTACNATAN
CGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAATTCATAGACAGTCTAGCTAGGTAGCACAG
TTGGTTGCTTCCCTCCTTTGGAAGCTTACAGGGTACCTTATGGTGCCATG
TCATTTAATCTCCAGGATGGAGGTGTTCAGGTCAGGCCTTGCTCAGGTTA
GAAGTGGGCTGTTTTGGGGGAGACTCTTCTACAACTCTGACCAACAATTT
AAAAGAGGGCTTCTCATGTCCAGTTTTGGAATTTTTCTTAGGTGGTCTTT
GGCACTTGGAGGTAGCTTTGTCTATTTAGATGGGGGAAATCCATTTAAAC
AATATCATATTTATATTCAGACATAAGCTTTATAGATTTATTTTTAGATA
AAATTAATAGTGTGATTCCTTATGACTACTCCAGATCCTTACTGTATTTT
ATCCTCCTTTTCCTGCATTTACTTTCCTTCCCTTCTCTAAAGAGGTATCT
TTTCATATTTCTCCAACCACACCACTTATTCCCTGATATTCTCTCATCTA
TTGCCCTTCATTTTCCCATTCCAGCCACTGTCCTGGTTTCTATACTTATT
CCAGGATATATACTCATATTTTATTATTTGGAGGTAGGAGCCTTNCATAA
GAGAAAACATGTGATGTTTGTCTTTCTGGGGTTGGGGTATCTCACTTAAT
ATGATTCTATTCTAGTTTCACCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_a23.b1 MSMg01no480_a23.b1 CHROMAT_FILE:
MSMg01no480_a23.b1 PHD_FILE: MSMg01no480_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:15 2005
         (639 letters)



>mm_chr4_110565755_110566793
          Length = 1039

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttcccattacccttatcactcagctcataactgtctatgaatatagttctag 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaattcagttcccagcacccttatcactcagctcataactgtctatgaatatagttctag 272

                                                                       
Query: 65  gagatctgatgctatactccttcatcaggcacctgcacacaggtgatagatagtcacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gagatctgatgctatactccttcatcaggcacctgcacacaggtgatagatagtcacaca 212

                                                                       
Query: 125 tgcatactgtcttaattactgttctattgctgtgaagaaacaccatgaccacacaaacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgcatactgtcttaattactgttctattgctgtgaagaaacaccatgaccacacaaacta 152

                                                                       
Query: 185 ttgaaacaaaacacttattttggggattgcttagtttcataggattagtctattatcttg 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 151 ttgaaacaaaacacttattttgggggttgcttagtttcataggattagtctattatcttg 92

                                                                       
Query: 245 gtagtgggggaagtagggtagcatacaggcaggctaggccctgggaaagagagctttata 304
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 91  gtagtgggggaagtagggtagcatacaggcaggcaaggccctgggaaagagagccttata 32

                                          
Query: 305 tcctgaacctcaagaagccatgaaaaagaaa 335
           |||||||||||||||||||||||||||||||
Sbjct: 31  tcctgaacctcaagaagccatgaaaaagaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)