Query= MSMg01no480_n21.b1 MSMg01no480_n21.b1 CHROMAT_FILE:
MSMg01no480_n21.b1 PHD_FILE: MSMg01no480_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:18 2005
(648 letters)
>mm_chr4_100360958_100362004
Length = 1047
Score = 1093 bits (565), Expect = 0.0
Identities = 619/649 (95%), Gaps = 22/649 (3%)
Strand = Plus / Plus
Query: 1 tgaaagcagggagtgtcctcacgcctgtctgccagaccaaagcctgcctgcaggcccaag 60
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 201 tgaaagcagggagtgtcctcacgcctgtctgccagacgaa-gcctgcctgcaggcccaag 259
Query: 61 ggcatcccatgtcagcctgtacacagcc-tgtcactttgccaatgccaacctcagaaaag 119
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 260 ggcatcccatgtcagcctgtacacagccct-tcactttgccaatgccaacctcagaaaag 318
Query: 120 gaacaatggtttctcaggcttcatcagtccattttgtcagcaggccttctggggacatct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaacaatggtttctcaggcttcatcagtccattttgtcagcaggccttctggggacatct 378
Query: 180 atgtcacccaggtcggaaggaccagaccctactttagcaggcaactggaacaagagcacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgtcacccaggtcggaaggaccagaccctactttagcaggcaactggaacaagagcacc 438
Query: 240 actgctctgtgtctgtgccagcatacctcacacaacctgtgttatgatgagcgcaacctg 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actgctctgtgtctatgccagcatacctcacacaacctgtgttatgatgagcgcaacctg 498
Query: 300 actgtgacatataatatttccacttaccaacagaaatccgaccccaaactggcaagaggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actgtgacatataatatttccacttaccaacagaaatccgaccccaaactggcaagaggc 558
Query: 360 tcaggtgagatcagaacccaggcccacacaattcacagccaggctctgactgagcagtca 419
|||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 tcaggtgagatcagaacccaggcccacacaattcacag-------------------tca 599
Query: 420 caacagcccattgtccataggcattagtgtaaccagaagtgtcagcttgctctgtttaca 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 600 caacagcccattgtccataggcattagtgtaaccaaaagtgtcagcttgctctgtttaca 659
Query: 480 tttcttctcatgacagagttacctaaggtcgttttccacgcatgtaccagacctagaaca 539
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 660 tttcttttcatgacagagttacctaaggtcgttttccgctcatgtaccagacctagaaca 719
Query: 540 ccttcacctcctcctcagcacctccacccccaattaccctgtgagcctcttccttctaca 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 720 ccttcacctcctcctcagcacctccatccccaattaccctgtgagcctcttccttctaca 779
Query: 600 acctaccctgttccctggacagtttcacttctcattttgtctttagtac 648
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 780 acctaccctgttccctggacagttttacttctcattttgtctttagtac 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_n21.g1 MSMg01no480_n21.g1 CHROMAT_FILE:
MSMg01no480_n21.g1 PHD_FILE: MSMg01no480_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:19 2005
(587 letters)
>mm_chr4_100521439_100522425
Length = 987
Score = 623 bits (322), Expect = 0.0
Identities = 325/326 (99%)
Strand = Plus / Minus
Query: 262 gggaatcaaagctaggtaggccctctgaaagagcagccagcgctcttaaccactgagcca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gggaatcaaagctaggtaggccctctgaaagagcagccagcgctcttaaccactgagcca 926
Query: 322 tctcttcagcctacaccattttttttttttttgagacttgatctcaccataggactcaga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tctcttcagcctacaccattttttttttttttgagacttgatctcaccataggactcaga 866
Query: 382 ctagccttgaactcccaattcttctggcctctgcttcccaagtgttggaactaaaggcat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctagccttgaactcccaattcttctggcctctgcttcccaagtgttggaactaaaggcat 806
Query: 442 atcccaacatacctggctttaattgagttaaaaaattataaatgcatctctgcacttcat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atcccaacatacctggctttaattgagttaaaaaattataaatgcatctctgcacttcat 746
Query: 502 tgtaaggggagtggccaggtataaatgcaatgaaatttttaggatgaagatttgaatgga 561
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtaaggggagtggccaggtatgaatgcaatgaaatttttaggatgaagatttgaatgga 686
Query: 562 gaataattctcacaaatgttgagttt 587
||||||||||||||||||||||||||
Sbjct: 685 gaataattctcacaaatgttgagttt 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
