Query= MSMg01no480_o07.b1 MSMg01no480_o07.b1 CHROMAT_FILE:
MSMg01no480_o07.b1 PHD_FILE: MSMg01no480_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:21 2005
(240 letters)
>mm_chr4_89475855_89476494
Length = 640
Score = 433 bits (224), Expect = e-126
Identities = 236/242 (97%), Gaps = 4/242 (1%)
Strand = Plus / Minus
Query: 1 ttgcaaatgtgagtataaaatgtatcatcattcctgtccctcgtgccacttacgagtcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgcaaatgtgagtataaaatgtatcatcattcctgtccctcgtgccacttacgagtcgt 261
Query: 61 caggaaaggatcaatcagtgaattcactcactcaccctcagcaaattaatctgagagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggaaaggatcaatcagtgaattcactcactcaccctcagcaaattaatctgagagacc 201
Query: 121 aggccaattccatcttac----ggtcaggctccatcttagagaacttgatctaacgttgc 176
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aggccaattccatcttactgtcggtcaggctccatcttagagaacttgatctaacgttgc 141
Query: 177 actggagttaactaccaagcctgtacctagcactagtctcctggccactccctaacaacc 236
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 140 actggagttaactaccaagcctgtaactagcactagtctcctggtcactccctaacaacc 81
Query: 237 ac 238
||
Sbjct: 80 ac 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no480_o07.g1 MSMg01no480_o07.g1 CHROMAT_FILE:
MSMg01no480_o07.g1 PHD_FILE: MSMg01no480_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:21 2005
(296 letters)
>mm_chr4_89271678_89272373
Length = 696
Score = 565 bits (292), Expect = e-165
Identities = 296/298 (99%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 1 ttcagttgcttcttccagatattgatcacagtggtgaaatatgattaatgcagtattgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagttgcttcttccagatattgatcacagtggtgaaatatgattaatgcagtattgtc 260
Query: 61 taggcactttccatgtaatgtttttctactaggttgtaaaaattttgaaggcaggaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcactttccatgtaatgtttttctactaggttgtaaaaattttgaaggcaggaagca 320
Query: 121 tgtcttttttttccattggatattttctttatttacatttcaaatgttaacaccttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttttttttccattggatattttctttatttacatttcaaatgttaacaccttttct 380
Query: 181 ggttccccccccc--gaaaactacttgttcccctccccctgcttctgtgagggtgttgcc 238
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttcccccccccccgaaaactacttgttcccctccccctgcttctgtgagggtgttgcc 440
Query: 239 ccacccacccactcactcctgtcttcctgccctggcattcccctacgctggggcatcg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacccacccactcactcctgtcttcctgccctggcattcccctacgctggggcatcg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
