Query= MSMg01no481_d18.b1 MSMg01no481_d18.b1 CHROMAT_FILE:
MSMg01no481_d18.b1 PHD_FILE: MSMg01no481_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:48 2005
(639 letters)
>mm_chr4_56535577_56536615
Length = 1039
Score = 1091 bits (564), Expect = 0.0
Identities = 613/640 (95%), Gaps = 21/640 (3%)
Strand = Plus / Plus
Query: 1 caaagttctgcaatgaaccacactccgtggactacagttcaaaactactcatctctgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagttctgcaatgaaccacactccgtggactacagttcaaaactactcatctctgaca 260
Query: 61 aagtttatttccgtggggttgttccccttatgagatttctctcacaaaagaagagaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtttatttccgtggggttgttccccttatgagatttctctcacaaaagaagagaatct 320
Query: 121 tatgtctttaagtcccccacccccaccccctgctgtatgggtaagtagaagaaatctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtctttaagtcccccacccccaccccctgctgtatgggtaagtagaagaaatctccc 380
Query: 181 agctataaaggtttcagaaaaagccaagtttacaccaaaatgttatggtcctgtgttcac 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctattaaggtttcagaaaaagccaagtttacaccaaaatgttatggtcctgtgttcac 440
Query: 241 atactttaaagaagaccatgttggcctcccccatcccgtattaccatgagctcagtgagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactttaaagaagaccatgttggcctcccccatcccgtattaccatgagctcagtgagg 500
Query: 301 atagaacagcagtaggtgctctgtgccctttaaatggatggtaacgatgcaggccaaagg 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagatcagcagtaggtgctctgtgccctttaaatggatggtaacgatgcaggccaaagg 560
Query: 361 agatgctaagcagatgatttcatttcactacgcatcagtacttaaatggagtggcttaat 420
||||||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 561 agatgctaagcagatgatttcatttcactgcgcatc-g-------atg-agt-------- 603
Query: 421 tgtacttaattgacaacagagaaggcagatctagcaaccataaaaaaa-ggagagaaact 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 604 ---acttaattgacaacagagaaggcagatctagcaaccataaaaaaaaggagagaaacg 660
Query: 480 ttaagctttctttacttcaagtgctttagggatacttgttgcctaaaagccacatctgag 539
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaagctttccttacttcaaatgctttagggatacttgttgcctaaaagccacatctgag 720
Query: 540 taagggataagaggtcctttggtccacagcatgacattagcttctccacacttacaggtg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taagggataagaggtcctttggtccacagcatgacattagcttctccacacttacaggtg 780
Query: 600 agaaaactgcactcagtgaattaaaaactcctggctctga 639
||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaaaactgcactcagtgaattaaaaactcctggctctga 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_d18.g1 MSMg01no481_d18.g1 CHROMAT_FILE:
MSMg01no481_d18.g1 PHD_FILE: MSMg01no481_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:49 2005
(631 letters)
>mm_chr4_56709092_56710122
Length = 1031
Score = 938 bits (485), Expect = 0.0
Identities = 495/503 (98%), Gaps = 8/503 (1%)
Strand = Plus / Minus
Query: 1 aacagttcctaagacctcatgcactgaaggcttggtcccctgttggtggcattactgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacagttcctaagacctcatgcactgaaggcttggtcccctgttggtggcattactgaga 444
Query: 61 aggcactaggtcatgagggtgttaacctacgggtgaacgaacccgcggatgagggtgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggcactaggtcatgagggtgttaacctacgggtgaacgaacccgcggatgagggtgtca 384
Query: 121 tgggggcagggcagctgaaggggacagatcactggtgcatgacactgaaggtacatttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgggggcagggcagctgaaggggacagatcactggtgcatgacactgaaggtacatttag 324
Query: 181 tccctggattccccttctctcctggcccccaccgtgtgctttcttccatggtgtctggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccctggattccccttctctcctggcccccaccgtgtgctttcttccatggtgtctggct 264
Query: 241 ttctctgggggccatggaacagaacctctgaaactatgaacaaaatagaacttttatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttctctgggggccatggaacagaacctctgaaactatgaacaaaatagaacttttatttt 204
Query: 301 taaatggttttagagctttattgtagaaaggcaggggaaaggagagaagg--------ga 352
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 203 taaatggttttagagctttattgtagaaaggcaggggaaaggagagaagggagagagaga 144
Query: 353 gagagagagagagagagagagagagagagagagagagagagagagagagagagcagctat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gagagagagagagagagagagagagagagagagagagagagagagagagagagcagctat 84
Query: 413 ggccatgtggagggaagggcattatggaatatataattgctcagacatatgtagaaattc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ggccatgtggagggaagggcattatggaatatataattgctcagacatatgtagaaattc 24
Query: 473 acaatggacagtgacagcatgct 495
|||||||||||||||||||||||
Sbjct: 23 acaatggacagtgacagcatgct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
