Query= MSMg01no481_n19.b1 MSMg01no481_n19.b1 CHROMAT_FILE:
MSMg01no481_n19.b1 PHD_FILE: MSMg01no481_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:38 2005
(636 letters)
>mm_chr4_35715661_35716697
Length = 1037
Score = 1151 bits (595), Expect = 0.0
Identities = 610/615 (99%), Gaps = 1/615 (0%)
Strand = Plus / Plus
Query: 23 ggtgtcatggagactgccataaattgtggaagagcagaggaggtctccttagacacgccc 82
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggtgtcatggagacggccataaattgtggaagagcagaggaggtctccttagacacgccc 282
Query: 83 tggttcaccttctcacttctgaggtaaaagacagaggcctagaaaggttacaaagcaccc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tggttcaccttctcacttctgaggtaaaagacagaggcctagaaaggttacaaagcaccc 342
Query: 143 tgtgcagtggcaaacacatgagtttaaaatcacaattcctttaactaaatctatggcttt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtgcagtggcaaacacatgagtttaaaatcacaattcctttaactaaatctatggcttt 402
Query: 203 tcctatgtcattgcaaaaacccacggatataggcaaaatagaatagtatcctttggaaag 262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 403 tcctatgtcattgcaaaaacccacggatataggcaaaataggatagtatcctttggaaag 462
Query: 263 gaatttttaaaagtttattttatgttatatgtgtgaatgttttgcctgcctatttgtctg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaatttttaaaagtttattttatgttatatgtgtgaatgttttgcctgcctatttgtctg 522
Query: 323 tgcctttctgcatgttttgtgcccacaggggtcatgagaagacactagattccttggaac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgcctttctgcatgttttgtgcccacaggggtcatgagaagacactagattccttggaac 582
Query: 383 tcaagttactgttggtggtgagctgccatgtgagtactgagaatcaaacctgggtccctt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcaagttactgttggtggtgagctgccatgtgagtactgagaatcaaacctgggtccctt 642
Query: 443 gcaagaaaaaaagaaaacaagcaaacaaacaaaaaacccactttcatctgctgagccatg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gcaagaaaaaaagaaaacaagcaaacaaacaaaaaacccactttcatctgctgagccatg 702
Query: 503 tctccagaacccagaaggaattttttttt-aaagcagaaaaagcatcgagcagagaagag 561
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 703 tctccagaacccagaaggaattttttttttaaagcagaaaaagcattgagcagagaagag 762
Query: 562 aaagcagctatgagaagaaaaggtgtgtcaacataaatctccctcccaagttcaaatggg 621
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 763 aaagcagctatgagaagaaaaggtgtgtcaacataaatctccctcccgagttcaaatggg 822
Query: 622 cagcaacaaaatcag 636
|||||||||||||||
Sbjct: 823 cagcaacaaaatcag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_n19.g1 MSMg01no481_n19.g1 CHROMAT_FILE:
MSMg01no481_n19.g1 PHD_FILE: MSMg01no481_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:38 2005
(516 letters)
>mm_chr4_35867258_35868173
Length = 916
Score = 878 bits (454), Expect = 0.0
Identities = 499/514 (97%), Gaps = 4/514 (0%)
Strand = Plus / Minus
Query: 4 tgggaggcagaggcaggtgcatttctgttagttggaggtcactctggtctatagagcaag 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 546 tgggaggcagaggcaggtgcatttctgttaggtggaggtcactctggtctataaagcaag 487
Query: 64 ttccaggacaggcaaggctacacagagaaaacctgtctcctgtcttagaagagaatgaga 123
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 486 ttccagggcaggcaaggctacacagaaaaaacctgtctcctgtcttagaagagaatgaga 427
Query: 124 gagagaaaa-gggattggggtaacttaagaaattacatttacattttaagatccatttta 182
||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagagaaaacggg-ttggggtaatttaagaaattacatttacattttaagatccatttta 368
Query: 183 tttgttttcgagattgtttacttttaaattatgtatcatctcatgtttatctgtgaaggg 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgttttcaagattgtttacttttaaattatgtatcatctcatgtttatctgtgaaggg 308
Query: 243 agaatgttcctgaggaggccaaagacagcagacctcatggacctgtgggaatagacaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 agaatgttcctgaggaggccaaagacagcagacctcatggacctgtgggcatagacaatt 248
Query: 303 ttgaggattctagtgcaggaggtagaaacagaagttgaatcctcagggttagtgcccatg 362
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 247 ttgaggattctagtgcaggaggtagaaacagaagttgagtcctcaggggtagtgcccatg 188
Query: 363 tataaccactgagctctctctagcctattgaattattctttttttgtgtgggggaacttt 422
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct: 187 cataaccactgagctctctctagcctattgaattattc-ttttttgtgt-ggggaacatt 130
Query: 423 tttcttgtttcttttctttctctttacctcattttctcaaatgatgctctcaagcatcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tttcttgtttcttttctttctctttacctcattttctcaaatgatgctctcaagcatcat 70
Query: 483 tgttctagttgaagacactccgaatatttactgt 516
||||||||||||||||||||||||||||||||||
Sbjct: 69 tgttctagttgaagacactccgaatatttactgt 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
